cluster # 1676

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Anopheles gambiae
cluster # 1676 cluster # 1676 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1676#0 length = 880 sequences # 1

consensus_1676#1 length = 547 sequences # 1

consensusID : consensus_1676#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 880
fasta sequence

                              [GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAGCTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAATACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATAAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAACCAATGCATAGTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAACTAAGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGATTCANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATATCGGTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCTTCATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAACCGGTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTTCAGCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCACACANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCCAANTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACACACAGCACACACACAGCACACACACAANCACAACACAANCAAC]

[+] EMBL AL694592             [GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAGCTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAATACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATAAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAACCAATGCATAGTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAACTAAGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGATTCANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATATCGGTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCTTCATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAACCGGTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTTCAGCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCACACANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCCAANTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACACACAGCACACACACAGCACACACACAANCACAACACAANCAAC]




>consensus_1676#0
GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAG
CTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAA
TACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTAC
ACTGAACAAAGGATTCCGCGATGTCAATAAAACTCTAATGTACGGTTTTAGAATGATGCA
TGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAACCAATGCATA
GTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAACTA
AGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGATT
CANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATATCG
GTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCTTC
ATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAACCG
GTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTTCA
GCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCACAC
ANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCCAA
NTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACACAC
AGCACACACACAGCACACACACAANCACAACACAANCAAC

consensusID : consensus_1676#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [ACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTCACCAGTGATATTGAAATTGAAACCAATGATAGTGATAGAGCACTAAACCACTTTGTTTTGGCGAAATATATTCAAAACAGACTAGCCGGGTTGTAAATGCAGCAGAAAATGAAACATAATCTTTAGTACTGATTCAGTCTTTCTCCGAGTTACGCCAGTTCGAGTTAGGTTAATTTTTATTTGTGACAGTTCATATGTCTAACCAGTACAATTTTCTCCATCTCTTATCAAATGAAAATAATTAGCATATTTTCTTCAAAAGTGTTACGTCACTAAAAAGACATACATGACCGAATTTTCTACACCATTGCATTGAATAAGTAATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAATAAAGTATATTTTGGCTGTAAAACTTAAAAAAANAAAAAAAAAAACCAGGCATGTGCGCCTCGGGGCGATTCT]

[-] EMBL AL693455             [ACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTACGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTCACCAGTGATATTGAAATTGAAACCAATGATAGTGATAGAGCACTAAACCACTTTGTTTTGGCGAAATATATTCAAAACAGACTAGCCGGGTTGTAAATGCAGCAGAAAATGAAACATAATCTTTAGTACTGATTCAGTCTTTCTCCGAGTTACGCCAGTTCGAGTTAGGTTAATTTTTATTTGTGACAGTTCATATGTCTAACCAGTACAATTTTCTCCATCTCTTATCAAATGAAAATAATTAGCATATTTTCTTCAAAAGTGTTACGTCACTAAAAAGACATACATGACCGAATTTTCTACACCATTGCATTGAATAAGTAATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAATAAAGTATATTTTGGCTGTAAAACTTAAAAAAANAAAAAAAAAAACCAGGCATGTGCGCCTCGGGGCGATTCT]




>consensus_1676#1
ACAAGAACTTATGCTACACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTA
CGGTTTTAGAATGATGCATGATCACGATCAGTTCAAAGAAACTTTCACCAGTGATATTGA
AATTGAAACCAATGATAGTGATAGAGCACTAAACCACTTTGTTTTGGCGAAATATATTCA
AAACAGACTAGCCGGGTTGTAAATGCAGCAGAAAATGAAACATAATCTTTAGTACTGATT
CAGTCTTTCTCCGAGTTACGCCAGTTCGAGTTAGGTTAATTTTTATTTGTGACAGTTCAT
ATGTCTAACCAGTACAATTTTCTCCATCTCTTATCAAATGAAAATAATTAGCATATTTTC
TTCAAAAGTGTTACGTCACTAAAAAGACATACATGACCGAATTTTCTACACCATTGCATT
GAATAAGTAATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAATAAAGT
ATATTTTGGCTGTAAAACTTAAAAAAANAAAAAAAAAAACCAGGCATGTGCGCCTCGGGG
CGATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1676#0      GATCCCCCGGTTTTTTTTNTTCTTNTATNAACCAGAGNTACACATCGGCGTAATCACAAG 60
consensus_1676#1      ------------------------------------------------------------
                                                                                  

consensus_1676#0      CTCTTGGAATTAATTGGCCACGTCATACACGATAAGGAAACCCTACTTTAATAAAGCTAA 120
consensus_1676#1      ------------------------------------------------------------
                                                                                  

consensus_1676#0      TACTATTAATTCGACCCAAGAACATTGCCCTCCGGTTCGGACGACAAGAACTTATGCTAC 180
consensus_1676#1      -------------------------------------------ACAAGAACTTATGCTAC 17
                                                                 *****************

consensus_1676#0      ACTGAACAAAGGATTCCGCGATGTCAATA-AAACTCTAATGTACGGTTTTAGAATGATGC 239
consensus_1676#1      ACTGAACAAAGGATTCCGCGATGTCAATNTAAACTCTAATGTACGGTTTTAGAATGATGC 77
                      ****************************  ******************************

consensus_1676#0      ATGATCACGATCAGTTCAAAGAAACTTTTCACCAGTGATATTGACATTGAA-CCAATGCA 298
consensus_1676#1      ATGATCACGATCAGTTCAAAGAAACTTT-CACCAGTGATATTGAAATTGAAACCAATG-A 135
                      **************************** *************** ****** ****** *

consensus_1676#0      TAGTGATCAGAGCACCTAAAACCCACTTAGTCTCGGGAAATATTATTTCAAAAACAGAAC 358
consensus_1676#1      TAGTGAT-AGAGCACTAAA---CCACTTTGTTTTGGCGAAA--TATATTCAAAACAGA-C 188
                      ******* *******  **   ****** ** * **  **   *** *  ******** *

consensus_1676#0      TAAGACCGGGTTGTNAATGGCAGGCCAGGANAATGAAACATTAATCTTNTAGGTACTGGA 418
consensus_1676#1      TA--GCCGGGTTGTAAATG-CAGC---AGAAAATGAAACAT-AATCTTT--AGTACTG-A 238
                      **   ********* **** ***     ** ********** ******    ****** *

consensus_1676#0      TTCANGTCTTTCTCCGAGGTTACGGCCAGTTTCCGGAGTTAGNGTTAAATATCTGAATAT 478
consensus_1676#1      TTCAG-TCTTTCTCCGAG-TTACG-CCAGTTC---GAGTTAGG-TTAATTTT-----TAT 286
                      ****  ************ ***** ******    *******  **** * *     ***

consensus_1676#0      CGGTGGAACAGTTNCATATTGTTCTTAAACCCAGGTACCAAATTTTCTTCCCATTCCTCT 538
consensus_1676#1      TTGTG--ACAGTTC-ATATGTCT----AACC--AGTAC--AATTTTCT--CCATCTCT-- 331
                        ***  ******  ****   *    ****   ****  ********  ****  **  

consensus_1676#0      TCATTCCAANTGAACAANNTAATTAAGCATATTTCTCCTTTCCAACAAAGTGGGTTCAAC 598
consensus_1676#1      ---TATCAAATG---AAAATAATTA-GCATATTT----TCTTCAA--AAGTG----TTAC 374
                         *  *** **   **  ****** ********    * * ***  *****      **

consensus_1676#0      CGGTCACCTACACAACACAGGACACTTACCAATTGGAACCCGGACACATNCTCTTCCCTT 658
consensus_1676#1      --GTCACTAAAAAGACATACA--------TGACCGAATTTTCTACACCATTGCATTGAAT 424
                        *****  * *  *** *            *  * *      ****     * *    *

consensus_1676#0      CAGCACACCCAACACTCGGCCACCTTGGAAACTAACANGTACCATCTANAATCTACCCAC 718
consensus_1676#1      AAGTA-ATTAATTACACAAATGAACTAAATTCAATCAAAAATCATTCTTAAT------AA 477
                       ** * *   *  ** *        *  *  * * **   * ***    ***      * 

consensus_1676#0      ACANNACTTGGGCAGCCTAAAACTTCCCCAACATTCCAGCAAAACTCCANTCTCCTGTCC 778
consensus_1676#1      AGTATATTTTGGCTG--TAAAACTTA--AAAAAANAAAAAAAAAAACCAGGCA--TGTGC 531
                      *    * ** *** *  ********    ** *    *  ****  ***  *   *** *

consensus_1676#0      AANTTCACACAGGTCCATTACTTNTCAGGGCCCTGGCTCACACACCCTCTCNCACCACAC 838
consensus_1676#1      GCCTCGGGGCGATTCT-------------------------------------------- 547
                         *     *   **                                             

consensus_1676#0      ACAGCACACACACAGCACACACACAANCACAACACAANCAAC 880
consensus_1676#1      ------------------------------------------