cluster # 1680

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Anopheles gambiae
cluster # 1680 cluster # 1680 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1680#0 length = 442 sequences # 1

consensus_1680#1 length = 427 sequences # 1

consensusID : consensus_1680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT]

[+] EMBL BM592780             [CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT]




>consensus_1680#0
CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGT
TCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAAT
AAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGT
AACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCT
TCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCT
AGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAG
CAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAA
TGAATAAAAATTAAATTTGTTT

consensusID : consensus_1680#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT]

[+] EMBL BM595654             [CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAATTTGTTT]




>consensus_1680#1
CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGTTCTGCTCAACTTGCT
ATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAATAAAATCTAAATGGAG
CAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGTAACATTGGATGTGTT
CTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCTTCGGAACAATCAGCC
GGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCTAGCAGCAGTGCTCCG
GTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAGCAAGGGATCACCGGT
GCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAATGAATAAAAATTAAA
TTTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1680#0      CCGCCCACGCGTCCGCCCACGCGTCCGAAATTGTACGGGCAGCACACAGCTCGTTTACGT 60
consensus_1680#1      ---------------CCGAACAAAACAAAATTGTACGGGCAGCACACAGCTCGTTTACGT 45
                                     ** *      * *********************************

consensus_1680#0      TCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAAT 120
consensus_1680#1      TCTGCTCAACTTGCTATCAAGAAATAGTACACATTCCGCCGTTCCTGATAAGCAATAAAT 105
                      ************************************************************

consensus_1680#0      AAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGT 180
consensus_1680#1      AAAATCTAAATGGAGCAACAGGTAGACAACATACTTGATAAAGTCATGGACGTACCAGGT 165
                      ************************************************************

consensus_1680#0      AACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCT 240
consensus_1680#1      AACATTGGATGTGTTCTAGCCAACAGTCAAGGGCTGTGTCTGGGAGTGAAAGGCAATGCT 225
                      ************************************************************

consensus_1680#0      TCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCT 300
consensus_1680#1      TCGGAACAATCAGCCGGAATAATAGTGGCTATATCTGATTTAGCATCCAAACTAGATCCT 285
                      ************************************************************

consensus_1680#0      AGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAG 360
consensus_1680#1      AGCAGCAGTGCTCCGGTCATTTCATTAGAGTCCAACGACAAAATATGTATGATTCACAAG 345
                      ************************************************************

consensus_1680#0      CAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAA 420
consensus_1680#1      CAAGGGATCACCGGTGCAATTTACAAGCAGAAGGGAGCATAGATGTAAGCGTTATCAGAA 405
                      ************************************************************

consensus_1680#0      TGAATAAAAATTAAATTTGTTT 442
consensus_1680#1      TGAATAAAAATTAAATTTGTTT 427
                      **********************