cluster # 1684

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Anopheles gambiae
cluster # 1684 cluster # 1684 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1684#0 length = 585 sequences # 1

consensus_1684#1 length = 442 sequences # 1

consensusID : consensus_1684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [ACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAGCGTCGAGGTCAGCAGGTAGCAGCAGCCAAGCAGTGCGCGTTTGCCCTCGCGTTTTGTGTCCTCCGTGTGTGAATCCTTTTTTCAGTTTCGGTTTTTCCGTTTTTTAATCTTGCGAGCTGCCCGTTACTTGCGCCCGTCCGCTGTCCGCGAAAGTGTGAGTGGGTGGGTGTGTGGGTGGGTGTGCGGGAGTGCGTGTGTGTGTGTGTGTACGTGTGCCCATGGCTGAGCTGTACGTGTGACGAGTCGCTGGTCTGCTCGGGGACTTTTCCCATTACAAGAGACAGGGACTTTTTTTTCTTTGCTCGTGCGATGGCGGTGATGGAGAAAATGCTGCGAAGGAATCGATCGATCCGAAACAAGTTGCTGCTTAGAAGGTGGATTCTGTGAAGTGAAATTGCTGGAACGCGTACTGTGTGAGCCTGCTAGCGCCGTGAAGAAAAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTGCGGT]

[+] EMBL BX610191             [ACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAGCGTCGAGGTCAGCAGGTAGCAGCAGCCAAGCAGTGCGCGTTTGCCCTCGCGTTTTGTGTCCTCCGTGTGTGAATCCTTTTTTCAGTTTCGGTTTTTCCGTTTTTTAATCTTGCGAGCTGCCCGTTACTTGCGCCCGTCCGCTGTCCGCGAAAGTGTGAGTGGGTGGGTGTGTGGGTGGGTGTGCGGGAGTGCGTGTGTGTGTGTGTGTACGTGTGCCCATGGCTGAGCTGTACGTGTGACGAGTCGCTGGTCTGCTCGGGGACTTTTCCCATTACAAGAGACAGGGACTTTTTTTTCTTTGCTCGTGCGATGGCGGTGATGGAGAAAATGCTGCGAAGGAATCGATCGATCCGAAACAAGTTGCTGCTTAGAAGGTGGATTCTGTGAAGTGAAATTGCTGGAACGCGTACTGTGTGAGCCTGCTAGCGCCGTGAAGAAAAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTGCGGT]




>consensus_1684#0
ACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAGCGTCGAGGTCAGCAGGTA
GCAGCAGCCAAGCAGTGCGCGTTTGCCCTCGCGTTTTGTGTCCTCCGTGTGTGAATCCTT
TTTTCAGTTTCGGTTTTTCCGTTTTTTAATCTTGCGAGCTGCCCGTTACTTGCGCCCGTC
CGCTGTCCGCGAAAGTGTGAGTGGGTGGGTGTGTGGGTGGGTGTGCGGGAGTGCGTGTGT
GTGTGTGTGTACGTGTGCCCATGGCTGAGCTGTACGTGTGACGAGTCGCTGGTCTGCTCG
GGGACTTTTCCCATTACAAGAGACAGGGACTTTTTTTTCTTTGCTCGTGCGATGGCGGTG
ATGGAGAAAATGCTGCGAAGGAATCGATCGATCCGAAACAAGTTGCTGCTTAGAAGGTGG
ATTCTGTGAAGTGAAATTGCTGGAACGCGTACTGTGTGAGCCTGCTAGCGCCGTGAAGAA
AAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTGCGGT

consensusID : consensus_1684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CCGGAAATTGGAAAAGTCACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAGCGTCGAGGTCAGCAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTGCGGTCGTGGAGCAGTGTCGCTAGTGTGGCGTTTGTCGCCCGCGGTGTCCGTCTGTGTGGGCCCGTGAGCCCGGTTTCGGTGGTGGTGCAGGGTGCGTGCGCGCGTGACCGTTGCGGCCACTAAGAGCGTGAAAAGAGCGTGTAAGAAAGGGAAGCAAGCAGGGCAAACGGCACCGCGCGGAGCGAAAGTAGCAAGAGAAAAGAAAAAGGAAGCAAGCGAGCAAGGTTGTAGAAGCGAGCGAGCGAAGAAGAAAAAGAAAAGAGGGTGCA]

[+] EMBL BM634492             [CCGGAAATTGGAAAAGTCACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAGCGTCGAGGTCAGCAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTGCGGTCGTGGAGCAGTGTCGCTAGTGTGGCGTTTGTCGCCCGCGGTGTCCGTCTGTGTGGGCCCGTGAGCCCGGTTTCGGTGGTGGTGCAGGGTGCGTGCGCGCGTGACCGTTGCGGCCACTAAGAGCGTGAAAAGAGCGTGTAAGAAAGGGAAGCAAGCAGGGCAAACGGCACCGCGCGGAGCGAAAGTAGCAAGAGAAAAGAAAAAGGAAGCAAGCGAGCAAGGTTGTAGAAGCGAGCGAGCGAAGAAGAAAAAGAAAAGAGGGTGCA]




>consensus_1684#1
CCGGAAATTGGAAAAGTCACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAG
CGTCGAGGTCAGCAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTGCGGTCGT
GGAGCAGTGTCGCTAGTGTGGCGTTTGTCGCCCGCGGTGTCCGTCTGTGTGGGCCCGTGA
GCCCGGTTTCGGTGGTGGTGCAGGGTGCGTGCGCGCGTGACCGTTGCGGCCACTAAGAGC
GTGAAAAGAGCGTGTAAGAAAGGGAAGCAAGCAGGGCAAACGGCACCGCGCGGAGCGAAA
GTAGCAAGAGAAAAGAAAAAGGAAGCAAGCGAGCAAGGTTGTAGAAGCGAGCGAGCGAAG
AAGAAAAAGAAAAGAGGGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1684#0      ------------------ACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAG 42
consensus_1684#1      CCGGAAATTGGAAAAGTCACCCGTGCAGCCAGTTTGGCCAGTTTGGCCAGTTTGAGTGAG 60
                                        ******************************************

consensus_1684#0      CGTCGAGGTCAGCAGGTAGCAGCAGCCAAGCAGTGCGCGTTTGCCCTCGCGTTTTGTGTC 102
consensus_1684#1      CGTCGAGGTCAGCAG-TGCCAATGGT--GGAAGTG-----TTGTTACAGCACCA-GCAGC 111
                      *************** *  **   *    * ****     ***     **     *   *

consensus_1684#0      CTCCGTGTGTGAATCCTTTTTTCAGTTTCGGTTTTTCCGTTTTTTAATCTTGCGAGCTGC 162
consensus_1684#1      AGCAGCAGCAGCAGC--------AGCAGCAGCAGCGGCGGCAGCT-------CGAGTCGT 156
                        * *     * * *        **   * *      **     *       ****  * 

consensus_1684#0      CCGTTACTTGCGCCCGTCCGCTGTCCGCGAAAGTGTGAGTGGGTGGGTGTGTGGGTGGGT 222
consensus_1684#1      C-GGTGTCAGTGTCGGTGCGGT---CGTGGAGCAGTGTC---GCTAGTGTGGCGTTTGTC 209
                      * * *    * * * ** ** *   ** * *   ***     *   *****  * * *  

consensus_1684#0      GTGCGGGAGTGCGTGTGTGTGTGTGTGTACGTGTGCCCATGGCTGAGCTGTACGTGTGAC 282
consensus_1684#1      GCCCGCG---GTGTCCGTCTGTGTGGGCCCGTGAGCCC--GGTTTCGGTG---GTGGTGC 261
                      *  ** *   * **  ** ****** *  **** ****  ** *  * **   ***   *

consensus_1684#0      GAGTCGCTGGTCTGCTCGGGGACTTTTCCCATTACAAGAGACAGGGACTTTTTTTTCTTT 342
consensus_1684#1      AGGGTGCGTGCGCGC---GTGACCGTTGCGGCCACTAAGAGCGTGAAAA----------- 307
                        *  **  *   **   * ***  ** *    ** *    *  * *             

consensus_1684#0      GCTCGTGCGATGGCGGTGATGGAGAAAATGCTGCGAA-GGAATCGATCGATCCGAAACAA 401
consensus_1684#1      GAGCGTGTAAGAAAGG----GAAGCAAGCAGGGCAAACGGCACCGCGCGGAGCGAAAGTA 363
                      *  ****  *    **    * ** **     ** ** ** * **  **   *****  *

consensus_1684#0      GTTGCTGCTTAGAAGGTGGATTCTGTGAAGTGAAATTGCTGGAACGCGTACTGTGTGAGC 461
consensus_1684#1      GCAAGAGAAAAGAAAAAGGAAGCAAGCGAGCAAGGTTGTAGAAGCGAG-------CGAGC 416
                      *     *   ****   ***  *     **  *  ***  * * ** *        ****

consensus_1684#0      CTGCTAGCGCCGTGAAGAAAAGTGCCAATGGTGGAAGTGTTGTTACAGCACCAGCAGCAG 521
consensus_1684#1      GAAGAAGAAAAAGAAAAGAGGGTGCA---------------------------------- 442
                           **       **  *  ****                                   

consensus_1684#0      CAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGCTCGAGTCGTCGGTGTCAGTGTCGGTG 581
consensus_1684#1      ------------------------------------------------------------
                                                                                  

consensus_1684#0      CGGT 585
consensus_1684#1      ----