cluster # 1700

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Anopheles gambiae
cluster # 1700 cluster # 1700 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1700#0 length = 678 sequences # 1

consensus_1700#1 length = 670 sequences # 1

consensusID : consensus_1700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence

                              [CCGTCAGAATAAACGGTAGACCATTTTTTATTTGATTGCCAAGATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAAGTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTGTCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGTATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTCCGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTCAGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCACTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTCAGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTACTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAGTTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTAGTTGGCCTTCATGCGATCAAATTGCCGACATAGGG]

[+] EMBL BM606457             [CCGTCAGAATAAACGGTAGACCATTTTTTATTTGATTGCCAAGATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAAGTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTGTCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGTATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTCCGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTCAGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCACTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTCAGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTACTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAGTTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTAGTTGGCCTTCATGCGATCAAATTGCCGACATAGGG]




>consensus_1700#0
CCGTCAGAATAAACGGTAGACCATTTTTTATTTGATTGCCAAGATTTATTTTAACTTTGT
CGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAAGTGAAAGAGATCGCGTG
TAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTGTCTTGCGCTGCCTTGTG
GTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGTATGTCACACTGACGTTT
TATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTCCGAACAGTGCTACGACA
CCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTCAGGAAGTTTTACACGGT
TGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCACTTTTTGTTATTAGAAG
GTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTCAGCTCAAAAATCCTGTC
ATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTACTTAGTTTCATTAGTTT
CTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAGTTCGTTTAATCTTACCG
CAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTAGTTGGCCTTCATGCGAT
CAAATTGCCGACATAGGG

consensusID : consensus_1700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGTAGACCATTTTTTATTTGATTGCCAAGATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAAGTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTGTCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGTATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTCCGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTCAGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCACTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTCAGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTACTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAGTTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTAGTTGGCCTTC]

[+] EMBL BM633345             [CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGTAGACCATTTTTTATTTGATTGCCAAGATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAAGTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTGTCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGTATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTCCGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTCAGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCACTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTCAGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTACTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAGTTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTAGTTGGCCTTC]




>consensus_1700#1
CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGTAGACCATTTTTTATTTGATTGCCAAG
ATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAA
GTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTG
TCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGT
ATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTC
CGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTC
AGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCA
CTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTC
AGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTA
CTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAG
TTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTA
GTTGGCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1700#0      ------------CCGTCAGAAT-----AAACGGTAGACCATTTTTTATTTGATTGCCAAG 43
consensus_1700#1      CCGCCCACGCGTCCGCCCACGCGTCCGAAACGGTAGACCATTTTTTATTTGATTGCCAAG 60
                                  *** *          *********************************

consensus_1700#0      ATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAA 103
consensus_1700#1      ATTTATTTTAACTTTGTCGATGGTTTACAAAATGTGATACGTCTTTGAGAAGAGAATAAA 120
                      ************************************************************

consensus_1700#0      GTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTG 163
consensus_1700#1      GTGAAAGAGATCGCGTGTAGTGTTCGCAGGGTTTTTGGGTTTCTGGCCGAGACGGAAGTG 180
                      ************************************************************

consensus_1700#0      TCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGT 223
consensus_1700#1      TCTTGCGCTGCCTTGTGGTTTATGTCAAGTTGACATATTCGCTTAATCCGTGCGCGGTGT 240
                      ************************************************************

consensus_1700#0      ATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTC 283
consensus_1700#1      ATGTCACACTGACGTTTTATGGTTAATCCGTGTGCGGTCTATACAATCGGAGGTCAGCTC 300
                      ************************************************************

consensus_1700#0      CGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTC 343
consensus_1700#1      CGAACAGTGCTACGACACCGTGGTCGCCACAGTTCCATCAAAACAGGGCAATTTTAGTTC 360
                      ************************************************************

consensus_1700#0      AGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCA 403
consensus_1700#1      AGGAAGTTTTACACGGTTGGGTTTCACGCATGGATATCGGGTTTTTCTCGATCGGGATCA 420
                      ************************************************************

consensus_1700#0      CTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTC 463
consensus_1700#1      CTTTTTGTTATTAGAAGGTTAGGAGTAAGAGCCAACATACCTTGTTCTATGTTTACATTC 480
                      ************************************************************

consensus_1700#0      AGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTA 523
consensus_1700#1      AGCTCAAAAATCCTGTCATCGAAACTGCTATAGCGCTTTGCCAGCTTTTGCCAGCTTGTA 540
                      ************************************************************

consensus_1700#0      CTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAG 583
consensus_1700#1      CTTAGTTTCATTAGTTTCTTCAAATAACACAGAAAACACGGCTGCTGCTTCGGAAGAAAG 600
                      ************************************************************

consensus_1700#0      TTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTA 643
consensus_1700#1      TTCGTTTAATCTTACCGCAATCAGCTTGAGTGCTGCAACGTCCGTTTTCCTCTGATTGTA 660
                      ************************************************************

consensus_1700#0      GTTGGCCTTCATGCGATCAAATTGCCGACATAGGG 678
consensus_1700#1      GTTGGCCTTC------------------------- 670
                      **********