cluster # 1705

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Anopheles gambiae
cluster # 1705 cluster # 1705 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1705#0 length = 944 sequences # 1

consensus_1705#1 length = 687 sequences # 1

consensusID : consensus_1705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 944
fasta sequence

                              [GAATNCCCCGAGGTTAACGGTGGCATNACGTTCGCGGACGGANCAGCTCGGTCGGACCATCAGCTGCGCCATCATCTGAACCATCGCACGGCGGCAGATGACGAGGACGACGAGGACGACGCGGATAGCATCGAGGAGAGCAAATTCTGCACCCTTCCACGCCACGGTCCTGAACGCATTTACCATCCGACAGTGCTCGCTTATTCGAAAGTGCAACGGAGCAAAAGCGCTCGGATTTTCCATATGTCGTGCTGTGTAAGGACTCGCCCAAGGTGCTCGATGGTGCATCTACGTGAAGACGATCTATCCGAACGGGCAGTGCGTGCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATACTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGATTGCGATCAACGTGTTCAAGGCGATCAAGACTGTGGCGANTGTGGTGATACTGATCGNGGCGCCGGAACAATCGCCGCAATGCTGGAAACGCCATCGCCGACCGATATCCGGCACCGNGACGGTACCACCGTNCACGACGGTTCGNCACAAACACATCAGTGCCAAATTGATAATTGAAAAACAGGCCGGAAACCTGACACGCGGAACGGTGTTAAAACTGTACAGAGAAGGTGNAGAACTTTTGGACGCCAAAANCAATGGTGAACAGAGNCAGCAGCGGCCNAGAAATGTACTAACCGGTCTGNTGTTCGGNTGTTAGAANTGTNGGCTTANGGAATCGNCAAAACCNCTAAAGCCCGGATAATGCTCTCATGANTGGTCTGTGGGTCGACTACCCACGCACATTTAACTATTTATGACCACAGTACACGGGTTTCGTATTCAAACAGCNGNAATATTGCAACAAAACAAAAAGGATTTTGCGCGCACTNCCCTAATNGGTAANAAGGGCGGCGGNTANANGNGGGAAACGTGGCGCG]

[+] EMBL AL933157             [GAATNCCCCGAGGTTAACGGTGGCATNACGTTCGCGGACGGANCAGCTCGGTCGGACCATCAGCTGCGCCATCATCTGAACCATCGCACGGCGGCAGATGACGAGGACGACGAGGACGACGCGGATAGCATCGAGGAGAGCAAATTCTGCACCCTTCCACGCCACGGTCCTGAACGCATTTACCATCCGACAGTGCTCGCTTATTCGAAAGTGCAACGGAGCAAAAGCGCTCGGATTTTCCATATGTCGTGCTGTGTAAGGACTCGCCCAAGGTGCTCGATGGTGCATCTACGTGAAGACGATCTATCCGAACGGGCAGTGCGTGCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATACTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGATTGCGATCAACGTGTTCAAGGCGATCAAGACTGTGGCGANTGTGGTGATACTGATCGNGGCGCCGGAACAATCGCCGCAATGCTGGAAACGCCATCGCCGACCGATATCCGGCACCGNGACGGTACCACCGTNCACGACGGTTCGNCACAAACACATCAGTGCCAAATTGATAATTGAAAAACAGGCCGGAAACCTGACACGCGGAACGGTGTTAAAACTGTACAGAGAAGGTGNAGAACTTTTGGACGCCAAAANCAATGGTGAACAGAGNCAGCAGCGGCCNAGAAATGTACTAACCGGTCTGNTGTTCGGNTGTTAGAANTGTNGGCTTANGGAATCGNCAAAACCNCTAAAGCCCGGATAATGCTCTCATGANTGGTCTGTGGGTCGACTACCCACGCACATTTAACTATTTATGACCACAGTACACGGGTTTCGTATTCAAACAGCNGNAATATTGCAACAAAACAAAAAGGATTTTGCGCGCACTNCCCTAATNGGTAANAAGGGCGGCGGNTANANGNGGGAAACGTGGCGCG]




>consensus_1705#0
GAATNCCCCGAGGTTAACGGTGGCATNACGTTCGCGGACGGANCAGCTCGGTCGGACCAT
CAGCTGCGCCATCATCTGAACCATCGCACGGCGGCAGATGACGAGGACGACGAGGACGAC
GCGGATAGCATCGAGGAGAGCAAATTCTGCACCCTTCCACGCCACGGTCCTGAACGCATT
TACCATCCGACAGTGCTCGCTTATTCGAAAGTGCAACGGAGCAAAAGCGCTCGGATTTTC
CATATGTCGTGCTGTGTAAGGACTCGCCCAAGGTGCTCGATGGTGCATCTACGTGAAGAC
GATCTATCCGAACGGGCAGTGCGTGCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATA
CTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGATTGCGATCAACGTGTT
CAAGGCGATCAAGACTGTGGCGANTGTGGTGATACTGATCGNGGCGCCGGAACAATCGCC
GCAATGCTGGAAACGCCATCGCCGACCGATATCCGGCACCGNGACGGTACCACCGTNCAC
GACGGTTCGNCACAAACACATCAGTGCCAAATTGATAATTGAAAAACAGGCCGGAAACCT
GACACGCGGAACGGTGTTAAAACTGTACAGAGAAGGTGNAGAACTTTTGGACGCCAAAAN
CAATGGTGAACAGAGNCAGCAGCGGCCNAGAAATGTACTAACCGGTCTGNTGTTCGGNTG
TTAGAANTGTNGGCTTANGGAATCGNCAAAACCNCTAAAGCCCGGATAATGCTCTCATGA
NTGGTCTGTGGGTCGACTACCCACGCACATTTAACTATTTATGACCACAGTACACGGGTT
TCGTATTCAAACAGCNGNAATATTGCAACAAAACAAAAAGGATTTTGCGCGCACTNCCCT
AATNGGTAANAAGGGCGGCGGNTANANGNGGGAAACGTGGCGCG

consensusID : consensus_1705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGGCAAAAGCGCTCGGATTTTCCATTGTCGGCGGTAAGGACTCGCCCAAGGGCTCGATGGGCATCTACGTGAAGACGATCTATCCGAACGGGCAGGCGGCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATCCTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGAGGCGATCAACGTGTTCAAGGCGATCAAGACGGGCGAGGTGGTGATACTGATCGGGCGCCGGAACAATCGCCGCAAGCTGGAGACGCCATCGCCGACCGATTCCGGCACCGGGACGGCACCACCGTCCACGACCGGTTCGCCCACCAACACCATCACGTGCAATGATGAATGAAAAAAAGCGGAAACCGCCACCGCACGTGTAAACTGTACAGAGAGTGAAGAAATTTGCACCAAACATGGGGCAGAGCAGCGTGAGAATGTACTAACGTCTTTTTTTTGGGTGTAAAATGTGGCTAGGAATCGAAAACACTAAACCCGATGATGCTCTCGTGCTGCTCTGTGGCGCAATACAATGAAATATTTAATATTTTTTTACCAAATACCAAAGGCTTCAATATCAAAAAAGCAGGAAAAATAAATTGAAAAAAAAAAGAAAATTCAAATGTGAAGTCGCAACCAGCAGAACCAGCAGATTCACCAACAAAACCAAATCGTTGTCTAGAGGATG]

[+] EMBL BM583591             [CCGGCAAAAGCGCTCGGATTTTCCATTGTCGGCGGTAAGGACTCGCCCAAGGGCTCGATGGGCATCTACGTGAAGACGATCTATCCGAACGGGCAGGCGGCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATCCTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGAGGCGATCAACGTGTTCAAGGCGATCAAGACGGGCGAGGTGGTGATACTGATCGGGCGCCGGAACAATCGCCGCAAGCTGGAGACGCCATCGCCGACCGATTCCGGCACCGGGACGGCACCACCGTCCACGACCGGTTCGCCCACCAACACCATCACGTGCAATGATGAATGAAAAAAAGCGGAAACCGCCACCGCACGTGTAAACTGTACAGAGAGTGAAGAAATTTGCACCAAACATGGGGCAGAGCAGCGTGAGAATGTACTAACGTCTTTTTTTTGGGTGTAAAATGTGGCTAGGAATCGAAAACACTAAACCCGATGATGCTCTCGTGCTGCTCTGTGGCGCAATACAATGAAATATTTAATATTTTTTTACCAAATACCAAAGGCTTCAATATCAAAAAAGCAGGAAAAATAAATTGAAAAAAAAAAGAAAATTCAAATGTGAAGTCGCAACCAGCAGAACCAGCAGATTCACCAACAAAACCAAATCGTTGTCTAGAGGATG]




>consensus_1705#1
CCGGCAAAAGCGCTCGGATTTTCCATTGTCGGCGGTAAGGACTCGCCCAAGGGCTCGATG
GGCATCTACGTGAAGACGATCTATCCGAACGGGCAGGCGGCCGAGAAGGGTACGCTGCAG
GCCGGCGACGAGATCCTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGAG
GCGATCAACGTGTTCAAGGCGATCAAGACGGGCGAGGTGGTGATACTGATCGGGCGCCGG
AACAATCGCCGCAAGCTGGAGACGCCATCGCCGACCGATTCCGGCACCGGGACGGCACCA
CCGTCCACGACCGGTTCGCCCACCAACACCATCACGTGCAATGATGAATGAAAAAAAGCG
GAAACCGCCACCGCACGTGTAAACTGTACAGAGAGTGAAGAAATTTGCACCAAACATGGG
GCAGAGCAGCGTGAGAATGTACTAACGTCTTTTTTTTGGGTGTAAAATGTGGCTAGGAAT
CGAAAACACTAAACCCGATGATGCTCTCGTGCTGCTCTGTGGCGCAATACAATGAAATAT
TTAATATTTTTTTACCAAATACCAAAGGCTTCAATATCAAAAAAGCAGGAAAAATAAATT
GAAAAAAAAAAGAAAATTCAAATGTGAAGTCGCAACCAGCAGAACCAGCAGATTCACCAA
CAAAACCAAATCGTTGTCTAGAGGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1705#0      GAATNCCCCGAGGTTAACGGTGGCATNACGTTCGCGGACGGANCAGCTCGGTCGGACCAT 60
consensus_1705#1      ------------------------------------------------------------
                                                                                  

consensus_1705#0      CAGCTGCGCCATCATCTGAACCATCGCACGGCGGCAGATGACGAGGACGACGAGGACGAC 120
consensus_1705#1      ------------------------------------------------------------
                                                                                  

consensus_1705#0      GCGGATAGCATCGAGGAGAGCAAATTCTGCACCCTTCCACGCCACGGTCCTGAACGCATT 180
consensus_1705#1      ------------------------------------------------------------
                                                                                  

consensus_1705#0      TACCATCCGACAGTGCTCGCTTATTCGAAAGTGCAACGGAGCAAAAGCGCTCGGATTTTC 240
consensus_1705#1      -------------------------------------CCGGCAAAAGCGCTCGGATTTTC 23
                                                              ********************

consensus_1705#0      CATATGTCGTGCTGTGTAAGGACTCGCCCAAGGTGCTCGATGGTGCATCTACGTGAAGAC 300
consensus_1705#1      CAT-TGTCG-GCGGT--AAGGACTCGCCCAAGG-GCTCGATGG-GCATCTACGTGAAGAC 77
                      *** ***** ** **  **************** ********* ****************

consensus_1705#0      GATCTATCCGAACGGGCAGTGCGTGCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATA 360
consensus_1705#1      GATCTATCCGAACGGGCAG-GCG-GCCGAGAAGGGTACGCTGCAGGCCGGCGACGAGATC 135
                      ******************* *** *********************************** 

consensus_1705#0      CTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGATTGCGATCAACGTGTT 420
consensus_1705#1      CTGTCGGTGAACGGGAAAGCATTCCAGGGCCTCTCGCACCAGGAG-GCGATCAACGTGTT 194
                      ********************************************  **************

consensus_1705#0      CAAGGCGATCAAGACTGTGGCGANTGTGGTGATACTGATCGNGGCGCCGGAACAATCGCC 480
consensus_1705#1      CAAGGCGATCAAGACG--GGCGAG-GTGGTGATACTGATCGGG-CGCCGGAACAATCGCC 250
                      ***************   *****  **************** * ****************

consensus_1705#0      GCAATGCTGGAAACGCCATCGCCGACCGATATCCGGCACCGNGACGGTACCACCGTNCAC 540
consensus_1705#1      GCAA-GCTGGAGACGCCATCGCCGACCGAT-TCCGGCACCGGGACGGCACCACCGTCCAC 308
                      **** ****** ****************** ********** ***** ******** ***

consensus_1705#0      GAC-GGTTCGNC-ACAAACACATCAGTGCCAAATTGATAATTGAAAAACAGGCCGGAAAC 598
consensus_1705#1      GACCGGTTCGCCCACCAACACCATCACGTGCAAT-GATGAATGAAAAAAAG--CGGAAAC 365
                      *** ****** * ** *****      *   *** *** * ******* **  *******

consensus_1705#0      CTGACACGCGGAACGGTGTTAAAACTGTACAGAGAAGGTGNAGAACTTTTGGACGCCAAA 658
consensus_1705#1      C-GCCAC-CGCA----CGTGTAAACTGTACAGAGA--GTGAAGAAATTT---GCACCAAA 414
                      * * *** ** *     **  **************  *** **** ***    * *****

consensus_1705#0      ANCAATGGTGAACAGAGNCAGCAGCGGCCNAGAAATGTACTAACCGGTCTGNTGTTCGGN 718
consensus_1705#1      CAT-----------GGGGCAG-AGCAGCGTGAGAATGTACTAAC--GTCTTTTTTTTGGG 460
                                    * * *** *** **     ***********  ****  * ** ** 

consensus_1705#0      TGTTAGAANTGTNGGCTTANGGAATCGNCAAAACCNCTAAAGCCCGGATAATGCTCTCAT 778
consensus_1705#1      TGT--AAAATGTGGCT---AGGAATCG---AAAACACTAAA--CCCGATGATGCTCTCGT 510
                      ***   ** *** *      *******   *** * *****  ** *** ******** *

consensus_1705#0      GANTGGTCTGTGGGTCGACTACCCACGCACATTTAACTATTTATGACCACAGTACACGGG 838
consensus_1705#1      G-CTGCTCTGTGGCGCAA-TACAATGAAATATTTAATATTTTTTTACCAAATACCAAAGG 568
                      *  ** *******  * * ***      * ******   *** * **** *   **  **

consensus_1705#0      TTTCG-TATTCAAACAGCNGNAATATTGCAACAAAACAAAAAGGAT--TTTGCGCGCACT 895
consensus_1705#1      CTTCAATATCAAAAAAGCAGGAAAAATAAATTGAAAAAAAAAAGAAAATTCAAATGTGAA 628
                       ***  ***  *** *** * ** * *  *   *** ***** **   **     *    

consensus_1705#0      NCCCTAATNGGTAANAAGGGCGG---CGGNTANANGNGGGAAACGTGGCGCG------- 944
consensus_1705#1      GTCGCAACCAGCAGAACCAGCAGATTCACCAACAAAACCAAATCGTTGTCTAGAGGATG 687
                        *  **   * *  *   ** *   *    * *      ** *** *