cluster # 1714

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Anopheles gambiae
cluster # 1714 cluster # 1714 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1714#0 length = 687 sequences # 1

consensus_1714#1 length = 585 sequences # 1

consensusID : consensus_1714#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [AGAATCGCCACGAGGTNGACTACGTCGTTTCATTTGTCATACGACGACGCTACGTCGGCTGGCGGTGGATGCAGTCACCTTTTCCGATGAGGACATCAGCTCGATGGTGATCGAGCACGATTTCTATCAGCTGGAGGATGTTTGGTTCACATCGGCCCCATATCTATCGATTGCTTCTGTAGAGATTCTGATGGACCGCTGCCCAGAGCTGCAGAGCGTTGGTCAGCTGAGCGGATGGGCATTGACGCCTGATGACGTGACGTTACTTCGCGGGATACTGAAAAGCTGCAACTCCTCTCTGGTACTGTCACCAGCAAGTATATTCCCGTGACCAAATTTTCTCTCAAAAATATCATGAAACGATAACTGGCTCACTCCTAGCTAGAGAACGTTTGTCCCTCTGGTTGTTCGTTGTTCCGACTTTGTATACTCACCGTTCACCAACGCTTACACCTTGTTCCCATCTGATTTTCTTTGTGTTACCCGTGACCATTTCATTTACCTATTCCTGTTNCCATCCGATTGGACAAGCCTCCCCCCGTATTCCGGTCCCTAGACAGGTGCTGAACACGTACCAGCCCCGAAGGAAAGCTAGACAACCCCGGTTATCGTGGGATCGTAATGCGACGCGACTGGATCGTTGTAACCGGGTTAAGGCACATAAAGGTTCCNATCTGTACTGTGTAC]

[+] EMBL BX469164             [AGAATCGCCACGAGGTNGACTACGTCGTTTCATTTGTCATACGACGACGCTACGTCGGCTGGCGGTGGATGCAGTCACCTTTTCCGATGAGGACATCAGCTCGATGGTGATCGAGCACGATTTCTATCAGCTGGAGGATGTTTGGTTCACATCGGCCCCATATCTATCGATTGCTTCTGTAGAGATTCTGATGGACCGCTGCCCAGAGCTGCAGAGCGTTGGTCAGCTGAGCGGATGGGCATTGACGCCTGATGACGTGACGTTACTTCGCGGGATACTGAAAAGCTGCAACTCCTCTCTGGTACTGTCACCAGCAAGTATATTCCCGTGACCAAATTTTCTCTCAAAAATATCATGAAACGATAACTGGCTCACTCCTAGCTAGAGAACGTTTGTCCCTCTGGTTGTTCGTTGTTCCGACTTTGTATACTCACCGTTCACCAACGCTTACACCTTGTTCCCATCTGATTTTCTTTGTGTTACCCGTGACCATTTCATTTACCTATTCCTGTTNCCATCCGATTGGACAAGCCTCCCCCCGTATTCCGGTCCCTAGACAGGTGCTGAACACGTACCAGCCCCGAAGGAAAGCTAGACAACCCCGGTTATCGTGGGATCGTAATGCGACGCGACTGGATCGTTGTAACCGGGTTAAGGCACATAAAGGTTCCNATCTGTACTGTGTAC]




>consensus_1714#0
AGAATCGCCACGAGGTNGACTACGTCGTTTCATTTGTCATACGACGACGCTACGTCGGCT
GGCGGTGGATGCAGTCACCTTTTCCGATGAGGACATCAGCTCGATGGTGATCGAGCACGA
TTTCTATCAGCTGGAGGATGTTTGGTTCACATCGGCCCCATATCTATCGATTGCTTCTGT
AGAGATTCTGATGGACCGCTGCCCAGAGCTGCAGAGCGTTGGTCAGCTGAGCGGATGGGC
ATTGACGCCTGATGACGTGACGTTACTTCGCGGGATACTGAAAAGCTGCAACTCCTCTCT
GGTACTGTCACCAGCAAGTATATTCCCGTGACCAAATTTTCTCTCAAAAATATCATGAAA
CGATAACTGGCTCACTCCTAGCTAGAGAACGTTTGTCCCTCTGGTTGTTCGTTGTTCCGA
CTTTGTATACTCACCGTTCACCAACGCTTACACCTTGTTCCCATCTGATTTTCTTTGTGT
TACCCGTGACCATTTCATTTACCTATTCCTGTTNCCATCCGATTGGACAAGCCTCCCCCC
GTATTCCGGTCCCTAGACAGGTGCTGAACACGTACCAGCCCCGAAGGAAAGCTAGACAAC
CCCGGTTATCGTGGGATCGTAATGCGACGCGACTGGATCGTTGTAACCGGGTTAAGGCAC
ATAAAGGTTCCNATCTGTACTGTGTAC

consensusID : consensus_1714#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCGGCCACACGGATGTGGCTTTGCTACTCCAGAACCTGCCAAACCTGGCTACGCTGAAGTCATACTCGTTCGTTGGTCGTAGCCTGCAGTACATCGTCGAGAAGAAGGATGCCAACTTCAAGTGTCGGTTGGTGTACGTACACGACATGGAAACGGACGCCGCAACACTGGATGCAATCGTACGTACCTGTCCACGGCTGGAGGACATCTATCTCGATTCGCCCGAGGCAGGCATACTGGAGAAGCTGTGTTCGGTGAAACTACGCCGCTTGAAGCTGTACAAGTTCAGCGCCTACGAATTGCTGGGGCTGGCGGAGCACAATGGCAAATCGCTGTACCATCTGACCGTAATCAAGGGATATGGTCCACTCGAGATCGATCGGCTTGTGCGCTCCTGTCCGAATCTGATCGATCTCGACTTCTACATGATGGATTCGTTGACGTTTGCGGGCGACAGCAGTTTCACCAATCTGCAAGGGTTGGAAATTTTGAGCAGTCCGATACAGAAGCCAAGCCTGCGTCGTTTCATTTGTCATACGATGACGCTACGCCGGCTGGCGGTGGATGCAGTCACCTTTTCCGATG]

[+] EMBL BM650059             [CCGGCCACACGGATGTGGCTTTGCTACTCCAGAACCTGCCAAACCTGGCTACGCTGAAGTCATACTCGTTCGTTGGTCGTAGCCTGCAGTACATCGTCGAGAAGAAGGATGCCAACTTCAAGTGTCGGTTGGTGTACGTACACGACATGGAAACGGACGCCGCAACACTGGATGCAATCGTACGTACCTGTCCACGGCTGGAGGACATCTATCTCGATTCGCCCGAGGCAGGCATACTGGAGAAGCTGTGTTCGGTGAAACTACGCCGCTTGAAGCTGTACAAGTTCAGCGCCTACGAATTGCTGGGGCTGGCGGAGCACAATGGCAAATCGCTGTACCATCTGACCGTAATCAAGGGATATGGTCCACTCGAGATCGATCGGCTTGTGCGCTCCTGTCCGAATCTGATCGATCTCGACTTCTACATGATGGATTCGTTGACGTTTGCGGGCGACAGCAGTTTCACCAATCTGCAAGGGTTGGAAATTTTGAGCAGTCCGATACAGAAGCCAAGCCTGCGTCGTTTCATTTGTCATACGATGACGCTACGCCGGCTGGCGGTGGATGCAGTCACCTTTTCCGATG]




>consensus_1714#1
CCGGCCACACGGATGTGGCTTTGCTACTCCAGAACCTGCCAAACCTGGCTACGCTGAAGT
CATACTCGTTCGTTGGTCGTAGCCTGCAGTACATCGTCGAGAAGAAGGATGCCAACTTCA
AGTGTCGGTTGGTGTACGTACACGACATGGAAACGGACGCCGCAACACTGGATGCAATCG
TACGTACCTGTCCACGGCTGGAGGACATCTATCTCGATTCGCCCGAGGCAGGCATACTGG
AGAAGCTGTGTTCGGTGAAACTACGCCGCTTGAAGCTGTACAAGTTCAGCGCCTACGAAT
TGCTGGGGCTGGCGGAGCACAATGGCAAATCGCTGTACCATCTGACCGTAATCAAGGGAT
ATGGTCCACTCGAGATCGATCGGCTTGTGCGCTCCTGTCCGAATCTGATCGATCTCGACT
TCTACATGATGGATTCGTTGACGTTTGCGGGCGACAGCAGTTTCACCAATCTGCAAGGGT
TGGAAATTTTGAGCAGTCCGATACAGAAGCCAAGCCTGCGTCGTTTCATTTGTCATACGA
TGACGCTACGCCGGCTGGCGGTGGATGCAGTCACCTTTTCCGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1714#0      AGAATCGCCACGAGGTNGACTACGTCGTTTCA--TTTGTCATACGACGAC--GCTACGTC 56
consensus_1714#1      ---------------CCGGCCACACGGATGTGGCTTTGCTACTCCAGAACCTGCCAAACC 45
                                       * * **   * *     ****  *  * *  **  ** *   *

consensus_1714#0      GGCTGGCGGTGGATGCAGTCACCTTTTCCGATGAGGACATCAGCTCGATGGTGATCGAGC 116
consensus_1714#1      TGGCTACGCTGAAGTCATACTCGTTCGTTGGTCGTAGCCTGCAGTACATCGTCGAGAAGA 105
                       *    ** ** *  **  * * **    * *     * *    *  ** **     ** 

consensus_1714#0      ACGATTTCTATCAGCTGGAGGATGTTTGGTTCACATCGGCCCCATATCTATCGAT--TGC 174
consensus_1714#1      AGGATGCCAACT--TCAAGTGTCGGTTGGTGTACGTACACGACATGGAAACGGACGCCGC 163
                      * ***  * *          *  * *****  ** *   *  ***    *  **    **

consensus_1714#0      TTCTGTAGAGATTCTGATGGACCGCTGCCCAGAGCTGCAGAGCGTTGGTC---AGCTGAG 231
consensus_1714#1      AACACTGGATGCAATCGTACGTACCTGTCCACGGCTGGAGGACATCTATCTCGATTCGCC 223
                        *  * **     *  *      *** ***  **** **  * *   **   *   *  

consensus_1714#0      CG-GATGGGCATT-----GACGCCTGATGACGTGACGTTACTTCGCGGGATACTGAAAAG 285
consensus_1714#1      CGAGGCAGGCATACTGGAGAAGCTGTGTTCGGTGAAACTACGCCGCTTGAAGCTGTACAA 283
                      ** *   *****      ** **    *   ****   ***  ***  **  *** * * 

consensus_1714#0      CTGCAACTCCTCTCTGGTACTGTCACCAGCA-AGTATATTCCCGTGACCAAATTTTCTCT 344
consensus_1714#1      GTTCAGCGCCTACGAATTGCTGGGGCTGGCGGAGCACAATGGCAAATCGCTGTACCATCT 343
                       * ** * ***      * ***   *  **  ** * * *  *    *    *    ***

consensus_1714#0      CAAAAATATCATGAAACGATAACTGGCTCACTCCTAGCTAGAGAACGTTTGTCCCTCTGG 404
consensus_1714#1      ---GACCGTAATCAAGGGATA--TGGTCCACTCGAGATCGATCGGCTTGTGCGCTCCTGT 398
                          *   * ** **  ****  ***  *****            * * **  *  *** 

consensus_1714#0      TTG---TTCGTTGTTCCGACTTTGTATACTCACCGTTCACCAACGCTTACACCTTGTTCC 461
consensus_1714#1      CCGAATCTGATCGATCTCGACTTCTACATGATGGATTCGTTGACGTTTGCGGGCGACAGC 458
                        *    *  * * **     ** ** *       ***    *** ** *         *

consensus_1714#0      CATCTGATTTTCTTTGTGTTACCCGTGACCATTTCATTTACCTATTCCTGTTNCCA--TC 519
consensus_1714#1      AGTTTCACCAA-TCTGCAAGGGTTG-GAAATTTTGAGCAGTCCGATACAGAAGCCAAGCC 516
                        * * *     * **        * **   *** *     *   * * *   ***   *

consensus_1714#0      CGATTGGACAAGCCTCCCCCCGTATTCCGGTCCCTAGACAGGTGCTGAACACG--TACCA 577
consensus_1714#1      TGCGTCGTTTCATTTGTCATACGATGACGCTACGCCGGCTGGCGGTGGATGCAGTCACCT 576
                       *  * *       *  *     **  ** * *   * * ** * ** *  *    *** 

consensus_1714#0      GCCCCGAAGGAAAGCTAGACAACCCCGGTTATCGTGGGATCGTAATGCGACGCGACTGGA 637
consensus_1714#1      TTTCCGATG--------------------------------------------------- 585
                         **** *                                                   

consensus_1714#0      TCGTTGTAACCGGGTTAAGGCACATAAAGGTTCCNATCTGTACTGTGTAC 687
consensus_1714#1      --------------------------------------------------