cluster # 1722

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Anopheles gambiae
cluster # 1722 cluster # 1722 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1722#0 length = 807 sequences # 1

consensus_1722#1 length = 676 sequences # 1

consensusID : consensus_1722#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCCCTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGGAAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCGCTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAATACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGACATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTGTGGGCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTGAACGGAGGCGACACGATCGGTGCGGTCGAGCGGGAGGACGCGGAACGGTCCTTCATCCGCCACTACCTGGACAAGCCGGACGCGGAGGCCAACGCCGGGTACTACGAGCTGATCGGGGTGCACGGGCAGCTCGATCCGCTCGTCAACATCGACCTCCGCCCGGAGCGGAAGGTAAAGGTGCGCTTCACCTTCGAGGATAAGGCGATCGAGCGTACGGTGGATGTGAACCGCACGGTAAGCGATTTGAAGTCCCGGCTGGAGCGGCTGTTCGATGTGCCGGCCGCCCGGATGCGGCTGTACTAAGTCGATCAGGACTTTCGCGATCTGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC]

[+] EMBL CNS09A6F             [ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCCCTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGGAAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCGCTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAATACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGACATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTGTGGGCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTGAACGGAGGCGACACGATCGGTGCGGTCGAGCGGGAGGACGCGGAACGGTCCTTCATCCGCCACTACCTGGACAAGCCGGACGCGGAGGCCAACGCCGGGTACTACGAGCTGATCGGGGTGCACGGGCAGCTCGATCCGCTCGTCAACATCGACCTCCGCCCGGAGCGGAAGGTAAAGGTGCGCTTCACCTTCGAGGATAAGGCGATCGAGCGTACGGTGGATGTGAACCGCACGGTAAGCGATTTGAAGTCCCGGCTGGAGCGGCTGTTCGATGTGCCGGCCGCCCGGATGCGGCTGTACTAAGTCGATCAGGACTTTCGCGATCTGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC]




>consensus_1722#0
ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCC
CTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGG
AAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCG
CTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAA
TACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGAC
ATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTG
TGGGCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTG
CCCAACATCAGTATTCTGAACGGAGGCGACACGATCGGTGCGGTCGAGCGGGAGGACGCG
GAACGGTCCTTCATCCGCCACTACCTGGACAAGCCGGACGCGGAGGCCAACGCCGGGTAC
TACGAGCTGATCGGGGTGCACGGGCAGCTCGATCCGCTCGTCAACATCGACCTCCGCCCG
GAGCGGAAGGTAAAGGTGCGCTTCACCTTCGAGGATAAGGCGATCGAGCGTACGGTGGAT
GTGAACCGCACGGTAAGCGATTTGAAGTCCCGGCTGGAGCGGCTGTTCGATGTGCCGGCC
GCCCGGATGCGGCTGTACTAAGTCGATCAGGACTTTCGCGATCTGCAGGGGCTGGAGGAG
ATGAAGTACCCGCACAAGGTGCTGTAC

consensusID : consensus_1722#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCAGGCTTATAAGTACTGGCCCCTGTGGCGCCCGGACTGACTCGTNGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTTGAACGGAGTGCGACACGATCGGTGCGGTCGAGCGGGAGTGACGCGGAACGGTCCTTCATCCTGCCACTACCTGGACAAGCCTGGACGCTGGAACGGNCCCTGCCGGTACTACAGAGCTGATCGGGGTGCACTGGGCAGCTCGATCCGCATCGTCAACATCGACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCGCTTCANCATTACNGAGGATAAGGCTGATCGAGCGTACGGTGGATGTGAACCTGCACGGTAAGCGATTTGAAGTACCCTGGACTGGAGCNGGCTAGTATCGATGTGCCTGGCACGACCGGATGCGGCATGTATTACGTCGATCAGGACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTACAGCTACAAATANGCTACCGGAGGATAGAGATCATCATACGAGCGGANGGTGAANAAGTTGATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAGAGAGCGTTACATCTTCCTGCCTTCCTTACCATCGGGTAATCTAACAAGCAATATACTNTATCTNNCCCCCCCTCNT]

[+] EMBL AL693711             [CCAGGCTTATAAGTACTGGCCCCTGTGGCGCCCGGACTGACTCGTNGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTTGAACGGAGTGCGACACGATCGGTGCGGTCGAGCGGGAGTGACGCGGAACGGTCCTTCATCCTGCCACTACCTGGACAAGCCTGGACGCTGGAACGGNCCCTGCCGGTACTACAGAGCTGATCGGGGTGCACTGGGCAGCTCGATCCGCATCGTCAACATCGACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCGCTTCANCATTACNGAGGATAAGGCTGATCGAGCGTACGGTGGATGTGAACCTGCACGGTAAGCGATTTGAAGTACCCTGGACTGGAGCNGGCTAGTATCGATGTGCCTGGCACGACCGGATGCGGCATGTATTACGTCGATCAGGACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTACAGCTACAAATANGCTACCGGAGGATAGAGATCATCATACGAGCGGANGGTGAANAAGTTGATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAGAGAGCGTTACATCTTCCTGCCTTCCTTACCATCGGGTAATCTAACAAGCAATATACTNTATCTNNCCCCCCCTCNT]




>consensus_1722#1
CCAGGCTTATAAGTACTGGCCCCTGTGGCGCCCGGACTGACTCGTNGACCGAGCACGAGC
GGCGCCAGCTGCTGATAGCGCGCCTGCCCAACATCAGTATTCTTGAACGGAGTGCGACAC
GATCGGTGCGGTCGAGCGGGAGTGACGCGGAACGGTCCTTCATCCTGCCACTACCTGGAC
AAGCCTGGACGCTGGAACGGNCCCTGCCGGTACTACAGAGCTGATCGGGGTGCACTGGGC
AGCTCGATCCGCATCGTCAACATCGACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCG
CTTCANCATTACNGAGGATAAGGCTGATCGAGCGTACGGTGGATGTGAACCTGCACGGTA
AGCGATTTGAAGTACCCTGGACTGGAGCNGGCTAGTATCGATGTGCCTGGCACGACCGGA
TGCGGCATGTATTACGTCGATCAGGACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGAT
GAAGTACCCGCACAAGGTGCTGTACAGCTACAAATANGCTACCGGAGGATAGAGATCATC
ATACGAGCGGANGGTGAANAAGTTGATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAG
AGAGCGTTACATCTTCCTGCCTTCCTTACCATCGGGTAATCTAACAAGCAATATACTNTA
TCTNNCCCCCCCTCNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1722#0      ATGGGTCTGCCACTAGTCAAACGAAAGAGCAGCAGCAGAAGGAGGTGGAGGAGGAAACCC 60
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      CTTACGCCAGCTGCTCCTGTTCTACGTCTTCCGCCGAGCCGCAGCAGCGAACCGACGCGG 120
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      AAGAACCGCCGCCATTACAGACCGATCCGCACGGTGGCGTCCGGAAGCTACACCTGCCCG 180
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      CTGAGATCGCTCAAACCCACCGACCCTCAAGGCAACGAAAGTGAGGAAGAAAGTCATAAA 240
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      TACTTTCAGAATCTGAAACTGCTAAACCTGAGCAATGCTAAAATCGACTCCTGGGAAGAC 300
consensus_1722#1      ------------------------------------------------------------
                                                                                  

consensus_1722#0      ATCGACCGGTTGGCAGAGTTTCCGTCCCTGTGCAACGTTCGGCTACAGTACTGGCCGCTG 360
consensus_1722#1      --------------------------------CCAGGCTTA--TA-AGTACTGGCCCCTG 25
                                                      * * * *    ** ********** ***

consensus_1722#0      TGG-GCCCGGACCGACTCGACGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCT 419
consensus_1722#1      TGGCGCCCGGACTGACTCGTNGACCGAGCACGAGCGGCGCCAGCTGCTGATAGCGCGCCT 85
                      *** ******** ******  ***************************************

consensus_1722#0      GCCCAACATCAGTATTCT-GAACGGAG-GCGACACGATCGGTGCGGTCGAGCGGGAG-GA 476
consensus_1722#1      GCCCAACATCAGTATTCTTGAACGGAGTGCGACACGATCGGTGCGGTCGAGCGGGAGTGA 145
                      ****************** ******** ***************************** **

consensus_1722#0      CGCGGAACGGTCCTTCATCC-GCCACTACCTGGACAAGCC-GGACGCGGAGGCCAACGCC 534
consensus_1722#1      CGCGGAACGGTCCTTCATCCTGCCACTACCTGGACAAGCCTGGACGCTGGAACGGNCCCT 205
                      ******************** ******************* ****** *   *   * * 

consensus_1722#0      G--GGTACTAC-GAGCTGATCGGGGTGCAC-GGGCAGCTCGATCCGC-TCGTCAACATCG 589
consensus_1722#1      GCCGGTACTACAGAGCTGATCGGGGTGCACTGGGCAGCTCGATCCGCATCGTCAACATCG 265
                      *  ******** ****************** **************** ************

consensus_1722#0      ACCTCCGC-CCGGAGC-GGAAGGTAAAGG--TGCGCTTCACCTT---CGAGGATAAGGC- 641
consensus_1722#1      ACCTCCGCACCGGAGCTGGAAGGTAAAGTGTTGCGCTTCANCATTACNGAGGATAAGGCT 325
                      ******** ******* ***********   ********* * *    *********** 

consensus_1722#0      GATCGAGCGTACGGTGGATGTGAACC-GCACGGTAAGCGATTTGAAGTCCC---GGCTGG 697
consensus_1722#1      GATCGAGCGTACGGTGGATGTGAACCTGCACGGTAAGCGATTTGAAGTACCCTGGACTGG 385
                      ************************** ********************* **   * ****

consensus_1722#0      AGCGG-CTGTT--CGATGTGCCGGCCGC--CCGGATGCGGC-TGTACTAAGTCGATCAGG 751
consensus_1722#1      AGCNGGCTAGTATCGATGTGCCTGGCACGACCGGATGCGGCATGTATTACGTCGATCAGG 445
                      *** * **  *  ********* * * *  *********** **** ** **********

consensus_1722#0      ACTTT-CGCG---ATCTGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC 807
consensus_1722#1      ACTTNTCGCAGATACTNGCAGGGGCTGGAGGAGATGAAGTACCCGCACAAGGTGCTGTAC 505
                      ****  ***    *   *******************************************

consensus_1722#0      ------------------------------------------------------------
consensus_1722#1      AGCTACAAATANGCTACCGGAGGATAGAGATCATCATACGAGCGGANGGTGAANAAGTTG 565
                                                                                  

consensus_1722#0      ------------------------------------------------------------
consensus_1722#1      ATAGNATTGTGCGTACACCGTAAAGAAAGAGAGAGAGAGCGTTACATCTTCCTGCCTTCC 625
                                                                                  

consensus_1722#0      ---------------------------------------------------
consensus_1722#1      TTACCATCGGGTAATCTAACAAGCAATATACTNTATCTNNCCCCCCCTCNT 676