cluster # 1725

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Anopheles gambiae
cluster # 1725 cluster # 1725 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1725#0 length = 694 sequences # 1

consensus_1725#1 length = 670 sequences # 1

consensusID : consensus_1725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCGAATTAAATCCTTCGCAAAAGGAGTCATCTTAATTATCGTCTCTTATCATAGTGCAAACTGACGCAGCAAGGCAGCTGTAGGAAGGGCGAAAAAGAAGAAGAAGAAAGAAACACCTTTATCAGTGATAGCGTATATTGTGGTGGTTGTTTGTTTTATCTTGTGTGCTAGTGGAATGCAAACTGCCATAGTCCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAACGGTACCTAAAGTGGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATGTGAAAAGCGGCACCGATCGCTGGTGGTGTCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGTCGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAAAAGCAGTGAAAATGACGACGTTGTGAAAACGGATCCCCGCCTCCAATACGTTTACTAGTGGAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATCGGTTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCTGGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTACTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAAACG]

[+] EMBL BM605924             [CCGAATTAAATCCTTCGCAAAAGGAGTCATCTTAATTATCGTCTCTTATCATAGTGCAAACTGACGCAGCAAGGCAGCTGTAGGAAGGGCGAAAAAGAAGAAGAAGAAAGAAACACCTTTATCAGTGATAGCGTATATTGTGGTGGTTGTTTGTTTTATCTTGTGTGCTAGTGGAATGCAAACTGCCATAGTCCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAACGGTACCTAAAGTGGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATGTGAAAAGCGGCACCGATCGCTGGTGGTGTCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGTCGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAAAAGCAGTGAAAATGACGACGTTGTGAAAACGGATCCCCGCCTCCAATACGTTTACTAGTGGAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATCGGTTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCTGGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTACTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAAACG]




>consensus_1725#0
CCGAATTAAATCCTTCGCAAAAGGAGTCATCTTAATTATCGTCTCTTATCATAGTGCAAA
CTGACGCAGCAAGGCAGCTGTAGGAAGGGCGAAAAAGAAGAAGAAGAAAGAAACACCTTT
ATCAGTGATAGCGTATATTGTGGTGGTTGTTTGTTTTATCTTGTGTGCTAGTGGAATGCA
AACTGCCATAGTCCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAACGG
TACCTAAAGTGGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATGTG
AAAAGCGGCACCGATCGCTGGTGGTGTCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGTCG
GCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAAAA
GCAGTGAAAATGACGACGTTGTGAAAACGGATCCCCGCCTCCAATACGTTTACTAGTGGA
AGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATCGG
TTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCTGG
CCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTACT
CGGGCGTGATCGGTGCCCGGTTCCTGCGCAAACG

consensusID : consensus_1725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CCGCTGAGCAGAAGTGCGAGAATTATATCTTTCGTGTGTGCTTGTGTGGCAGCGTGTTAGACACCTGGATAACTACCATCGTAATCAACTAGGCTTTAGCGCCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAACGGTACCTAAAGTTGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATGTGAAAAGCGGCACCGATCGCTGGTGGTATCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGTCGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAAAAGCAGTGAAAATGACGACGTTGTGAAAACGAACCCCCTCCTCCAATCCGTTTACTAGTGGAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATCGGTTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCTGGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTACTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAAAACGCCCGGCCGCAAGGGCGGCGTGGCGGAACCGCTGTCCGATAGCTACGACATGTGCGGCAACCGGTCG]

[+] EMBL BM637192             [CCGCTGAGCAGAAGTGCGAGAATTATATCTTTCGTGTGTGCTTGTGTGGCAGCGTGTTAGACACCTGGATAACTACCATCGTAATCAACTAGGCTTTAGCGCCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAACGGTACCTAAAGTTGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATGTGAAAAGCGGCACCGATCGCTGGTGGTATCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGTCGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAAAAGCAGTGAAAATGACGACGTTGTGAAAACGAACCCCCTCCTCCAATCCGTTTACTAGTGGAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATCGGTTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCTGGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTACTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAAAACGCCCGGCCGCAAGGGCGGCGTGGCGGAACCGCTGTCCGATAGCTACGACATGTGCGGCAACCGGTCG]




>consensus_1725#1
CCGCTGAGCAGAAGTGCGAGAATTATATCTTTCGTGTGTGCTTGTGTGGCAGCGTGTTAG
ACACCTGGATAACTACCATCGTAATCAACTAGGCTTTAGCGCCACTATCGCACCACAAAC
CGAGGAAGAAAACGTGCCAACGTGAACGGTACCTAAAGTTGGAAGAAAAATCTCTAGAAG
AAAGAAGAAAAAGTGCGACAGAAAATGTGAAAAGCGGCACCGATCGCTGGTGGTATCTCC
GCAAAGCTGCTCGAGCAGCGGTAGTGTCGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGT
GATAAGCGAACAAGTAGCGTATAGGAAAAGCAGTGAAAATGACGACGTTGTGAAAACGAA
CCCCCTCCTCCAATCCGTTTACTAGTGGAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCT
TTATATGCGTGTGTGTTTGTGAAGATCGGTTGTGAAGATGATGAAACGAAACTACGATGT
GCAGCACGTGGCTGCGGCTGGCAGCCTGGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAA
TCTGTTCGACAAGCTGAGCAAGCGCTACTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAA
AACGCCCGGCCGCAAGGGCGGCGTGGCGGAACCGCTGTCCGATAGCTACGACATGTGCGG
CAACCGGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1725#0      CCGAATTAAATCCTTCGCAAAAGGAGTCATCTTAATTATCGTCTCTTATCATAGTGCAAA 60
consensus_1725#1      ------------------------------------------------------------
                                                                                  

consensus_1725#0      CTGACGCAGCAAGGCAGCTGTAGGAAGGGCGAAAAAGAAGAAGAAGAAAGAAACACCTTT 120
consensus_1725#1      --------------------------CCGCTGAGCAGAAGTGCGAGAATTATAT-CTTTC 33
                                                  **  *  *****    ****  * *  * ** 

consensus_1725#0      ATCAGTGATAGCGTA-TATTGTGGTGGTTGTTTGTTTTATCTTGTGTGCTAGTGGAATGC 179
consensus_1725#1      GTGTGTGCTTGTGTGGCAGCGTGTTAGACACCTGGATAAC------TACCATCGTAATCA 87
                       *  *** * * **   *  *** * *     **  * *       * * *  * ***  

consensus_1725#0      AAACTGCCATAGT-CCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAAC 238
consensus_1725#1      ACTAGGCTTTAGCGCCACTATCGCACCACAAACCGAGGAAGAAAACGTGCCAACGTGAAC 147
                      *    **  ***  **********************************************

consensus_1725#0      GGTACCTAAAGTGGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATG 298
consensus_1725#1      GGTACCTAAAGTTGGAAGAAAAATCTCTAGAAGAAAGAAGAAAAAGTGCGACAGAAAATG 207
                      ************ ***********************************************

consensus_1725#0      TGAAAAGCGGCACCGATCGCTGGTGGTGTCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGT 358
consensus_1725#1      TGAAAAGCGGCACCGATCGCTGGTGGTATCTCCGCAAAGCTGCTCGAGCAGCGGTAGTGT 267
                      *************************** ********************************

consensus_1725#0      CGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAA 418
consensus_1725#1      CGGCGGTGTGGAAAACGAGCAGCAAGCAGTAGTGATAAGCGAACAAGTAGCGTATAGGAA 327
                      ************************************************************

consensus_1725#0      AAGCAGTGAAAATGACGACGTTGTGAAAACGGATCCCCGCCTCCAATACGTTTACTAGTG 478
consensus_1725#1      AAGCAGTGAAAATGACGACGTTGTGAAAACGAACCCCCTCCTCCAATCCGTTTACTAGTG 387
                      ******************************* * **** ******** ************

consensus_1725#0      GAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATC 538
consensus_1725#1      GAAGCGCGAAGTGAAAAGGAGCTTCCTTCACCTTTATATGCGTGTGTGTTTGTGAAGATC 447
                      ************************************************************

consensus_1725#0      GGTTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCT 598
consensus_1725#1      GGTTGTGAAGATGATGAAACGAAACTACGATGTGCAGCACGTGGCTGCGGCTGGCAGCCT 507
                      ************************************************************

consensus_1725#0      GGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTA 658
consensus_1725#1      GGCCGGCAGCAAGCACGGCAAGTCGTCGTCCAATCTGTTCGACAAGCTGAGCAAGCGCTA 567
                      ************************************************************

consensus_1725#0      CTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAAA-CG----------------------- 694
consensus_1725#1      CTCGGGCGTGATCGGTGCCCGGTTCCTGCGCAAAACGCCCGGCCGCAAGGGCGGCGTGGC 627
                      ********************************** **                       

consensus_1725#0      -------------------------------------------
consensus_1725#1      GGAACCGCTGTCCGATAGCTACGACATGTGCGGCAACCGGTCG 670