cluster # 1728

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Anopheles gambiae
cluster # 1728 cluster # 1728 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1728#0 length = 706 sequences # 1

consensus_1728#1 length = 347 sequences # 1

consensusID : consensus_1728#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCGTTAGCATTTATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCTCCCCCTCGCCACCCGACTGCTTTTGCTTTTGCGTGACGGTTTACTACTTAGAGCAAAAGAAGGGTACCCCGGCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAACTTATTATCGATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAATAATAGTCACTGGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAAAACACACAGTTAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGTAGTCAACACACACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCATCCGGCCAACGGAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC]

[+] EMBL BM605900             [CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCGTTAGCATTTATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCTCCCCCTCGCCACCCGACTGCTTTTGCTTTTGCGTGACGGTTTACTACTTAGAGCAAAAGAAGGGTACCCCGGCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAACTTATTATCGATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAATAATAGTCACTGGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAAAACACACAGTTAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGTAGTCAACACACACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCATCCGGCCAACGGAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC]




>consensus_1728#0
CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACT
ACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAA
CATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACC
CACTGCAGTGATCGTTAGCATTTATTTAAAGCTTATTATTATATATATACACACACACAG
TCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCTCCCCCTCGCCA
CCCGACTGCTTTTGCTTTTGCGTGACGGTTTACTACTTAGAGCAAAAGAAGGGTACCCCG
GCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAACTTATTATCG
ATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAATAATAGTCACT
GGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAAAACACACAGT
TAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGTAGTCAACACA
CACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCATCCGGCCAACG
GAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC

consensusID : consensus_1728#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTTCGACACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT]

[+] EMBL BX466217             [CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTTCGACACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT]




>consensus_1728#1
CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACC
TGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACAT
GCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCAC
TGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACACAGT
CTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTTCGA
CACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1728#0      CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACT 60
consensus_1728#1      ---CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACT 57
                         **  *   ***      ****************************************

consensus_1728#0      ACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAA 120
consensus_1728#1      ACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAA 117
                      ************************************************************

consensus_1728#0      CATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACC 180
consensus_1728#1      CATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACC 177
                      ************************************************************

consensus_1728#0      CACTGCAGTGATCGTTA--GCATTTATTTAAAGCTTATTATTATATATATACACACACAC 238
consensus_1728#1      CACTGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACAC 237
                      *************  **  ***** ***********************************

consensus_1728#0      AGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCT---CCCCCT 295
consensus_1728#1      AGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTT 297
                      *********************************************** **    **** *

consensus_1728#0      CGCCACCCGACTGCTTT---TGCTTT-TGCGTGACGGTT-TACTACTTAGAGCAAAAGAA 350
consensus_1728#1      CGACACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT---------- 347
                      ** *********** **    *****  **********  ****** *            

consensus_1728#0      GGGTACCCCGGCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAA 410
consensus_1728#1      ------------------------------------------------------------
                                                                                  

consensus_1728#0      CTTATTATCGATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAAT 470
consensus_1728#1      ------------------------------------------------------------
                                                                                  

consensus_1728#0      AATAGTCACTGGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAA 530
consensus_1728#1      ------------------------------------------------------------
                                                                                  

consensus_1728#0      AACACACAGTTAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGT 590
consensus_1728#1      ------------------------------------------------------------
                                                                                  

consensus_1728#0      AGTCAACACACACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCAT 650
consensus_1728#1      ------------------------------------------------------------
                                                                                  

consensus_1728#0      CCGGCCAACGGAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC 706
consensus_1728#1      --------------------------------------------------------