These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGGTGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATAGCATCGGTGGTTTGTGTGTATGTACATGAGTAAAACGCCCATCGTCCTGGCGTATCGCTTGGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGGTTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCGCTCGGCGTAACGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAGCTCAACATCACATCCACGTACGAGTATCTGGAGACACG] [+] EMBL BM630451 [CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGGTGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATAGCATCGGTGGTTTGTGTGTATGTACATGAGTAAAACGCCCATCGTCCTGGCGTATCGCTTGGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGGTTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCGCTCGGCGTAACGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAGCTCAACATCACATCCACGTACGAGTATCTGGAGACACG] consensusID : consensus_1745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTCCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGGTGGTGTAGCAGCTTCCGAAACCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATAGTATCGGTGGTTTGTGTGTTTTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGGCGTGTCGTTTGGGGTGATTGCTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGATTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGGTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG] [+] EMBL BM605583 [CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGATAGATAAAGGATTGTCCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGGTGGTGTAGCAGCTTCCGAAACCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATAGTATCGGTGGTTTGTGTGTTTTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGGCGTGTCGTTTGGGGTGATTGCTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGGCGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGATTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGCGTCTACTTCGGGTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGCCGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATTACCCTGCTCGGGCTACCGACGGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1745#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGATCGAACATTCGCTGCGCCACGGCGGAT 60 consensus_1745#1 --------------------CCGCGGGCGAGGATCGAACATTCGCTGCGCCACGGCGGAT 40 ** ********************************** consensus_1745#0 AGATAAAGGATTGTTCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCGCCGG 120 consensus_1745#1 AGATAAAGGATTGTCCCTTTATCGCGAACACGTTTCTGACGCGCATCTGATGTCCACCGG 100 ************** **************************************** **** consensus_1745#0 TGTTATAGCAGTTTCCGAAACCGATACGGTAGTGCTTTCCTTTCCTCCCCATAATCCATA 180 consensus_1745#1 TGGTGTAGCAGCTTCCGAAACCGATACGGTAGTGCTTTCTTTCCCTCCCCTTAATCGATA 160 ** * ****** *************************** ** ******* ***** *** consensus_1745#0 GCATCGGTGGTTTGTGTGT----------ATGTACATGAGTAAAACGCCCATCGTCCTGG 230 consensus_1745#1 GTATCGGTGGTTTGTGTGTTTTTGTGTCTGTGTACATGAGTAAAACGCCCATCGTCCTGG 220 * ***************** ****************************** consensus_1745#0 CGTATCGCTTGGGGTGATTGTTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGG 290 consensus_1745#1 CGTGTCGTTTGGGGTGATTGCTCGCGCAGGTGCTCTTCCTTCCCGATACACGAACCACGG 280 *** *** ************ *************************************** consensus_1745#0 CGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGATGCGG 350 consensus_1745#1 CGATCAAAGGCGAAGATCATGGCAACGGATTTGGAGGACATTGTGGAGCACATGAGGCGA 340 ******************************************************* *** consensus_1745#0 TTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGC 410 consensus_1745#1 TTCGCCTGGCCGGACTACCTGGTGTTCGTGTCGATGCTGATGCTCTGCATCCTGATAGGC 400 ************************************************************ consensus_1745#0 GTCTACTTCGGTTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGC 470 consensus_1745#1 GTCTACTTCGGGTTTGTGCAACGGAAACCCAACACCGAGTCCGAGTATCTGATGGGTGGC 460 *********** ************************************************ consensus_1745#0 CGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCTGGCATT 530 consensus_1745#1 CGGACAATGATGGTCTTCCCGATCGCCCTTTCCCTCATCGCTAGCTTCATTTCCGGCATT 520 ***************************************************** ****** consensus_1745#0 ACCCTGCTCGGGCTACCGACGGAGGTGTACTCGTTCGGCATTCAGTACGTGTATGTGGCG 590 consensus_1745#1 ACCCTGCTCGGGCTACCGACGGAGGTGTATTCGTTCGGCATTCAGTACGTGTATGTG--- 577 ***************************** *************************** consensus_1745#0 CTCGGCGTAACGCTGATGGGCTTCGTGATGGGCTTCATCTACCTGCCGGTGTTTCACAAG 650 consensus_1745#1 ------------------------------------------------------------ consensus_1745#0 CTCAACATCACATCCACGTACGAGTATCTGGAGACACG 688 consensus_1745#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||