cluster # 1751

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Anopheles gambiae
cluster # 1751 cluster # 1751 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1751#0 length = 797 sequences # 1

consensus_1751#1 length = 621 sequences # 1

consensusID : consensus_1751#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence

                              [GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATGTGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAACGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTAGGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCGGATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGGGGGAGATTAAAAACTNTNAACGTTCGTTATAACTATCGACTCCACACCTNGGACNAAAACCCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNATTAATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAAAAACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAGACCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTANACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTCCAAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAAANACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCAGAAGCGNTCGGTGGCTCA]

[+] EMBL AL693900             [GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATGTGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAACGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTAGGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCGGATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGGGGGAGATTAAAAACTNTNAACGTTCGTTATAACTATCGACTCCACACCTNGGACNAAAACCCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNATTAATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAAAAACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAGACCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTANACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTCCAAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAAANACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCAGAAGCGNTCGGTGGCTCA]




>consensus_1751#0
GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATG
TGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAA
CGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTA
GGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCG
GATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGG
GGGAGATTAAAAACTNTNAACGTTCGTTATAACTATCGACTCCACACCTNGGACNAAAAC
CCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNATT
AATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAAA
AACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAGA
CCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTAN
ACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTCC
AAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAAA
NACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCAG
AAGCGNTCGGTGGCTCA

consensusID : consensus_1751#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [AAGAGTGGCCATCTGGTTNCGATGGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTGGCTGCTGAAAACGACGATCCCTCCACTTGGCTGAAGAAACACCTGTCCGGGACCATCGATCGCGTAGGAATAGCTCAATCACTGCCGTGGAAGATAGGAATAAAATTTATTATAAGTGCGATTGGTGGAGTACGTTATACTACAGGATATTTTGCGAACGGATAAATTAATGTTATTTTTCAATGAAAACCCACTACCGCAATATTGTACTGTGGATTATCAACCTTCGGAAATTTTGAATGGAAAGTTGAAGAAAGCGGCAAAGGGTGAGCCGGTTAAAATGGTGATGATAATAAATTTTTGTGATGTGCTATTGAACGATGAATTGGAGAGTGTGCAGTTATCAACGCTGGTGGTAACGGAAAGCAATTTGATGCTAACACCAGACATTAGATGGCTCAATGAAAGCTCGGCATATCCGGTTGAACCCAAATATTCTCAACTTATGACGAACATTGTCGAGCTGGAGGATGTGAACGAGTTGTCATGCCGGTTGAACTATATGGACGAACAAGAGGACAAGTATGAAACGTGGCGACTCGATTTTGCT]

[+] EMBL BX620683             [AAGAGTGGCCATCTGGTTNCGATGGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTGGCTGCTGAAAACGACGATCCCTCCACTTGGCTGAAGAAACACCTGTCCGGGACCATCGATCGCGTAGGAATAGCTCAATCACTGCCGTGGAAGATAGGAATAAAATTTATTATAAGTGCGATTGGTGGAGTACGTTATACTACAGGATATTTTGCGAACGGATAAATTAATGTTATTTTTCAATGAAAACCCACTACCGCAATATTGTACTGTGGATTATCAACCTTCGGAAATTTTGAATGGAAAGTTGAAGAAAGCGGCAAAGGGTGAGCCGGTTAAAATGGTGATGATAATAAATTTTTGTGATGTGCTATTGAACGATGAATTGGAGAGTGTGCAGTTATCAACGCTGGTGGTAACGGAAAGCAATTTGATGCTAACACCAGACATTAGATGGCTCAATGAAAGCTCGGCATATCCGGTTGAACCCAAATATTCTCAACTTATGACGAACATTGTCGAGCTGGAGGATGTGAACGAGTTGTCATGCCGGTTGAACTATATGGACGAACAAGAGGACAAGTATGAAACGTGGCGACTCGATTTTGCT]




>consensus_1751#1
AAGAGTGGCCATCTGGTTNCGATGGATTATTCATCATGTCTACTACGAAGTTCTACATAA
TGAAGAAAGTGGCTGCTGAAAACGACGATCCCTCCACTTGGCTGAAGAAACACCTGTCCG
GGACCATCGATCGCGTAGGAATAGCTCAATCACTGCCGTGGAAGATAGGAATAAAATTTA
TTATAAGTGCGATTGGTGGAGTACGTTATACTACAGGATATTTTGCGAACGGATAAATTA
ATGTTATTTTTCAATGAAAACCCACTACCGCAATATTGTACTGTGGATTATCAACCTTCG
GAAATTTTGAATGGAAAGTTGAAGAAAGCGGCAAAGGGTGAGCCGGTTAAAATGGTGATG
ATAATAAATTTTTGTGATGTGCTATTGAACGATGAATTGGAGAGTGTGCAGTTATCAACG
CTGGTGGTAACGGAAAGCAATTTGATGCTAACACCAGACATTAGATGGCTCAATGAAAGC
TCGGCATATCCGGTTGAACCCAAATATTCTCAACTTATGACGAACATTGTCGAGCTGGAG
GATGTGAACGAGTTGTCATGCCGGTTGAACTATATGGACGAACAAGAGGACAAGTATGAA
ACGTGGCGACTCGATTTTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1751#0      GCTCAAGCAGATCGCCCCNAGGTTTATATCGCGTGGAAGAGTGGCCATCTGGTTTCGATG 60
consensus_1751#1      ------------------------------------AAGAGTGGCCATCTGGTTNCGATG 24
                                                          ****************** *****

consensus_1751#0      TGATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTTGCTTGCTGAAAA 120
consensus_1751#1      -GATTATTCATCATGTCTACTACGAAGTTCTACATAATGAAGAAAGTGGCT-GCTGAAAA 82
                       ********************************************** *** ********

consensus_1751#0      CGACGATCCCTACCACTTGTGCTGAAGAAACACCTGTACCGTGGACCATCGATACGCGTA 180
consensus_1751#1      CGACGATCCCT-CCACTTG-GCTGAAGAAACACCTGT-CCG-GGACCATCGAT-CGCGTA 137
                      *********** ******* ***************** *** *********** ******

consensus_1751#0      GGAATAGCTCAATCACCTGGCGTGGCAAGATAGGAATAAACATTCATTACTANAGCTGCG 240
consensus_1751#1      GGAATAGCTCAATCAC-TGCCGTGG-AAGATAGGAATAAA-ATTTATTA---TAAGTGCG 191
                      **************** ** ***** ************** *** ****    *  ****

consensus_1751#0      GATTTGGTGGAGTACCACGGTTATACTNACAGGGATAATTTTCTACGGGGGAAAACCCGG 300
consensus_1751#1      A--TTGGTGGAGTAC----GTTATACTA-CAGG----ATATTTTGCG------AAC---G 231
                         ************    ********  ****    ** ** * **      ***   *

consensus_1751#0      GGGAGATTAAAAACTNTNAACGTTCGTT-ATAACTATCGACTCCACACCTNGGACNAAAA 359
consensus_1751#1      GATAAATTAA----TGTTATTTTTCAATGAAAACCCACTACCGCA-ATATTGTACTGTGG 286
                      *  * *****    * * *   ***  * * ***   * **  ** *  * * **     

consensus_1751#0      CCCCCCCAACCTAACCCGGCCAACCTAATTCTTGGGTAAACCTNGGATNGGCGCANTNAT 419
consensus_1751#1      ATTATC-AACCT---TCGGAAATTTTGAAT----GGAAAGTTGAAGAAAGCGGCAAAGGG 338
                           * *****    ***  *   * * *    ** **      **  *  ***     

consensus_1751#0      TAATTCCAAAAACCCAATTCCAGCGGAACACAGAATNTAACTATGGACAAATTTGGGGAA 479
consensus_1751#1      TGAGCCGGTTAA---AATGGTGATGATA-ATAAATTTTTGTGATGTGCTATTGAACGATG 394
                      * *  *    **   ***      *  * * * * * *    ***  * * *    *   

consensus_1751#0      AAACAGGTNAGGCACACGNNAACNACTCGCTNGCGCANACACCAAGCGGGCTNTCGAAAG 539
consensus_1751#1      AATTGGAGAGTGTGCA-GTTATCAA--CGCTGGTGGTAACGGAAAGCAATTTGATGCTAA 451
                      **   *     *  ** *  * * *  **** * *   **   ****    *   *  * 

consensus_1751#0      ACCCCCCCGGGTATNCCTACAACAACNACNTTCAGGTGCGCTGGGCCNCTTCGCAANTTA 599
consensus_1751#1      ----CACCAGACATT--------AGATGGCTCAATGAAAGCTCGGCATATCCG---GTTG 496
                          * ** *  **         *      *  * *   *** ***   * **    ** 

consensus_1751#0      NACACACTAACACNCAACTNATACCAACCACNNGGTTGAGGAANTCAGGGTATAGGCCTC 659
consensus_1751#1      AACCCAAATATTCTCAACTTATGACGA--ACATTGTCGAGCTGGAGGATGTGAACGAGTT 554
                       ** **   *  * ***** **  * *  **   ** ***         **  * *  * 

consensus_1751#0      CAAANTCTNCTNGGAACAACACCGNCACACCTCAGGAACCCTCTCNGGGCGNACCCAGAA 719
consensus_1751#1      GTCATGCCGGTTG-AACTATATGGACGAACAAGAGGACAAGTATGA-----AACGTGGCG 608
                         *  *   * * *** * *  * *  **   ****    * *        **   *  

consensus_1751#0      ANACGATCGGGTATGAGNCACACNCGACNTCAACGCATCGAACAACCCAGGACACCATCA 779
consensus_1751#1      ACTCGATTTTGCT----------------------------------------------- 621
                      *  ****   *                                                 

consensus_1751#0      GAAGCGNTCGGTGGCTCA 797
consensus_1751#1      ------------------