These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1445 fasta sequence [GAGGTTNAATGTGTCATGTTGGGCGATGCGGGAGCTTGAAATATCAAAAGGATCACTGCATCTTCGAGTGGCTGCTCTGCTTGTGATCTGAAGTGGCTACATCCCCCGCTACGTGCTAGACACTGGCTACACAACGCTAATGCAATGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTTGCCTGTTGGCCCGAGTNCACCGGCATTAGGAGCGTTGCCAGCAGAACCGAGGTCGAGCGGAAGCAGTCGAGCCTGTTACGGGTCCGNCATTCGGCCACGCAATNCGGCACACTTTCCACCCCCGGCATTTCAACCTTTCCAACGAACGGTTCATTTCCGAAATTTCTAACGCGGCTTAAGGCTTTTCAAACTTGCACCGGTTACGCTAATACCCAATTCCTTAATNTATNCCCGGTTACCACAGGATACGACNCGGCGTACCACNCAACGCAGTNGNCACCCTTTGGNCCTGGCACTCGATGNTGGCATTACCCGTTCCAAATTTTGGGGNGACACATTTTGTAGNTTTAGGCTTAAACGGCTGCGCANNCAAACGTCGGTTGGCCCTTGGGTCCCCCAAATATNTATTACCNAATTANNTACTTANACATACCCGGACTTTCAACCCNCAATAANGGCCAAAATCGCCCAANGAGNTAACTTTTGGTCAGCAACACGNGAAACAAACATTGGCACGCCNTGGGATCNCCAATATACCCCAGTNGGCTGCGCTACACACNTCACGGGCACTAGCATTGGCCCCCAGGTTACANCGCCCCACACTTTCCCCCGGANTGTGCCATACANACCCCNGGACTATGGCCCCTTGTGGGCAANCNGCACACACCTTCTGGGCCAAACGACNAAGACTTCAATAGNTCGCACTCCNACACAANCCGGCANTCTACCCNAAGAACANGTCTACATCAAAGACAGAAGACACACCTGCANNAAACAANAGCGGGGGNNACACAGCACNAGCTCTTGGGNAANCCCGTGCACTANAACACTATAAAACCACCANAGAGGGTCGCACACNCCTACTGGTGATACCCCCCCCCAANCCTATGGCNGGCACANACGAACCATCAACTCCCGCANCACGCGGCAAANCTTCCCCCAACCGGCAGCACACACNATTATCAAACCAGCGGTANTCGACTAANAAACCCGCATTTGGGGAGCTATACAGCGCCCCCCTGGNCCGAAANCTTTGGCGAGCTATNCNGCCACCCAGGTAGCGNTANAAGCATCTACGANNTTCNTGANTGTCATNCGNCCTAGTGGTAGTTAGTAACTCGACCCCACACACACGTGATTATTNATGGAAAAACAATATTATTCGCGCCGCAACAGCCNAGTCTGCCCGCGCGAGANACCAAAAACACCAGTCAGTGNACAGCGCACTCTTGGTGAAATAAG] [+] EMBL AL693904 [GAGGTTNAATGTGTCATGTTGGGCGATGCGGGAGCTTGAAATATCAAAAGGATCACTGCATCTTCGAGTGGCTGCTCTGCTTGTGATCTGAAGTGGCTACATCCCCCGCTACGTGCTAGACACTGGCTACACAACGCTAATGCAATGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTTGCCTGTTGGCCCGAGTNCACCGGCATTAGGAGCGTTGCCAGCAGAACCGAGGTCGAGCGGAAGCAGTCGAGCCTGTTACGGGTCCGNCATTCGGCCACGCAATNCGGCACACTTTCCACCCCCGGCATTTCAACCTTTCCAACGAACGGTTCATTTCCGAAATTTCTAACGCGGCTTAAGGCTTTTCAAACTTGCACCGGTTACGCTAATACCCAATTCCTTAATNTATNCCCGGTTACCACAGGATACGACNCGGCGTACCACNCAACGCAGTNGNCACCCTTTGGNCCTGGCACTCGATGNTGGCATTACCCGTTCCAAATTTTGGGGNGACACATTTTGTAGNTTTAGGCTTAAACGGCTGCGCANNCAAACGTCGGTTGGCCCTTGGGTCCCCCAAATATNTATTACCNAATTANNTACTTANACATACCCGGACTTTCAACCCNCAATAANGGCCAAAATCGCCCAANGAGNTAACTTTTGGTCAGCAACACGNGAAACAAACATTGGCACGCCNTGGGATCNCCAATATACCCCAGTNGGCTGCGCTACACACNTCACGGGCACTAGCATTGGCCCCCAGGTTACANCGCCCCACACTTTCCCCCGGANTGTGCCATACANACCCCNGGACTATGGCCCCTTGTGGGCAANCNGCACACACCTTCTGGGCCAAACGACNAAGACTTCAATAGNTCGCACTCCNACACAANCCGGCANTCTACCCNAAGAACANGTCTACATCAAAGACAGAAGACACACCTGCANNAAACAANAGCGGGGGNNACACAGCACNAGCTCTTGGGNAANCCCGTGCACTANAACACTATAAAACCACCANAGAGGGTCGCACACNCCTACTGGTGATACCCCCCCCCAANCCTATGGCNGGCACANACGAACCATCAACTCCCGCANCACGCGGCAAANCTTCCCCCAACCGGCAGCACACACNATTATCAAACCAGCGGTANTCGACTAANAAACCCGCATTTGGGGAGCTATACAGCGCCCCCCTGGNCCGAAANCTTTGGCGAGCTATNCNGCCACCCAGGTAGCGNTANAAGCATCTACGANNTTCNTGANTGTCATNCGNCCTAGTGGTAGTTAGTAACTCGACCCCACACACACGTGATTATTNATGGAAAAACAATATTATTCGCGCCGCAACAGCCNAGTCTGCCCGCGCGAGANACCAAAAACACCAGTCAGTGNACAGCGCACTCTTGGTGAAATAAG] consensusID : consensus_1753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [AACGCTAATGCAAGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTGCCTGGTGGCCCCGAGTCCACCGCATAGAGCGTGCAGAGAACGAGTCGTGGGAAGCAGTCGACCCTGTTGGGTGCGCATCGCCACGCATCGCCACTTCACCCCGCATCACTTCAAAAGTCATTCGAATTTAGGCTAGCTTTTATGACGTTTTATCCTTCTATTTTCGTTCCCGTTTCGCTACCACAGCCTGCGCGGGGTTCCTCATTGGAATGGTGCTAGGAAAGGTGCTGTCCTTTTTTTCGCTACCAAGCAGCAGTATGAAAGAATGCTGTCATCCTGTGTATTGTGTGCCGTCGCATCCGTGCAACCGTGCTGGAGAATGAGATTTTTAGTCAATTAAAAGAAAAGGAAATGACGAATACAGCACTGCCCATGGAAAACAAGATCAGCATTAGTTACTGTACCGCATGTAGCGTATATTTTCCGTTCCACTTGAATCCACTCGCAAACGGACTGAGTGCCGCTGCATTCAACGAACACAAAAAGCGTAAGAAAATCCTAACCATTTTCTAACAGCGAAACGAATCAATTAATCTTTCTCCTATGTAAGGCAAAAGTCAGCATTTAGTTAGCAACA] [+] EMBL BX617390 [AACGCTAATGCAAGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTGCCTGGTGGCCCCGAGTCCACCGCATAGAGCGTGCAGAGAACGAGTCGTGGGAAGCAGTCGACCCTGTTGGGTGCGCATCGCCACGCATCGCCACTTCACCCCGCATCACTTCAAAAGTCATTCGAATTTAGGCTAGCTTTTATGACGTTTTATCCTTCTATTTTCGTTCCCGTTTCGCTACCACAGCCTGCGCGGGGTTCCTCATTGGAATGGTGCTAGGAAAGGTGCTGTCCTTTTTTTCGCTACCAAGCAGCAGTATGAAAGAATGCTGTCATCCTGTGTATTGTGTGCCGTCGCATCCGTGCAACCGTGCTGGAGAATGAGATTTTTAGTCAATTAAAAGAAAAGGAAATGACGAATACAGCACTGCCCATGGAAAACAAGATCAGCATTAGTTACTGTACCGCATGTAGCGTATATTTTCCGTTCCACTTGAATCCACTCGCAAACGGACTGAGTGCCGCTGCATTCAACGAACACAAAAAGCGTAAGAAAATCCTAACCATTTTCTAACAGCGAAACGAATCAATTAATCTTTCTCCTATGTAAGGCAAAAGTCAGCATTTAGTTAGCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1753#0 GAGGTTNAATGTGTCATGTTGGGCGATGCGGGAGCTTGAAATATCAAAAGGATCACTGCA 60 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 TCTTCGAGTGGCTGCTCTGCTTGTGATCTGAAGTGGCTACATCCCCCGCTACGTGCTAGA 120 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 CACTGGCTACACAACGCTAATGCAATGACTACATGACCTACCTTCGCAAGTACGTCGCCG 180 consensus_1753#1 ------------AACGCTAATGCAA-GACTACATGACCTACCTTCGCAAGTACGTCGCCG 47 ************* ********************************** consensus_1753#0 AACTGCGCAAGCAAGGAAAAGTTGCCTGTTGGCCCGAGTNCACCGGCATTAGGAGCGTTG 240 consensus_1753#1 AACTGCGCAAGCAAGGAAAAGTGCCTGGTGGCCCCGAGTCCACCG-CAT--AGAGCGT-- 102 ********************** * ** * ******* ***** *** ****** consensus_1753#0 CCAGCAGAACCGAGGTCGAGCGGAAGCAGTCGAGCCTGTTACGGGTCCGNCATTCGGCCA 300 consensus_1753#1 ---GCAGAGAACGAGTCGTG-GGAAGCAGTCGACCCTGTTGGGTGCGCATC-----GCCA 153 ***** **** * ************ ****** * * * * **** consensus_1753#0 CGCAATNCGGCACACTTTCCACCCCCGGCATTTCAACCTTTCCAACGAACGGTTCATTTC 360 consensus_1753#1 CGCATCGC----CACTTCAC-CCCGCATCACTTCAAAAGT-CATTCGAA---TTTAGGCT 204 **** * ***** * *** * ** ***** * * **** ** * consensus_1753#0 CGAAATTTCTAACGCGGCTTAAGGCTTTTCAAACTTGCACCGGTTACGCTAATACCCAAT 420 consensus_1753#1 ---AGCTTTTATGACGTTTTAT--CCTTCTATTTTCGTTCCCGTTTCGCTACCAC----- 254 * ** ** ** *** * ** * * * ** *** ***** ** consensus_1753#0 TCCTTAATNTATNCCCGGTTACCACAGGATACGACNCGGCGTACCACNCAACGCAGTNGN 480 consensus_1753#1 -----AGCCTGCGCGGGGTT-CCTCAT----TGGAATGGTG------CTAGGAAAGGTGC 298 * * * **** ** ** * ** * * ** * consensus_1753#0 CACCCTTTGGNCCTGGCACTCGATGNTGGCATTACCCGTTCCAAATTTTGGGGNGACACA 540 consensus_1753#1 TGTCCTTTT-TTTCGCTACCAAGCAGCAGTATGAAA------GAAT-----GCTGTCATC 346 ***** * ** * ** * *** * * ** consensus_1753#0 TTTTGTAGNTTTAGGCTTAAACGGCTGCGCANNCAAACGTCGGTTGGCCCTTGGGTCCCC 600 consensus_1753#1 CTGTGTA-TTGTGTGCCGTCGCATCCGTGCAACCG------TGCTGGAGAATGAGATTTT 399 * **** * * ** * * * *** * * *** ** * consensus_1753#0 CAAATATNTATTACCNAATTANNTACTTANACATACCCGGACTTTCAACCCNCAATAANG 660 consensus_1753#1 TAG---TCAATTAAAAGAAAAGGAAATGACGAATAC---AGC-----ACTGCCCATGGAA 448 * * **** * * * * * **** * ** * ** consensus_1753#0 GCCAAAATCGCCCAANGAGNTAACTTTTGGTCAGCAACACGNGAAACAAACATTGGCACG 720 consensus_1753#1 AACAAGATCAGC--ATTAGTTACTGTACCGCATGTAGCGTAT------ATTTTCCGTTCC 500 *** *** * * ** ** * * * * * * * * * consensus_1753#0 CCNTGGGATCNCCAATATACCCCAGTNGGCTGCGCTACACACNTCACGGGCACTAGCATT 780 consensus_1753#1 ACTTGAATCCACTCGCA-AACGGACTGAGTGCCGCTGCATTCA--ACGAACACAAAAAGC 557 * ** * * * * * * * * **** ** * *** *** * * consensus_1753#0 GGCCCCCAGGTTACANCGCCCCACACTTTCCCCCGGANTGTGCCATACANACCCCNGGAC 840 consensus_1753#1 ---------GTAAGAAAATCCTAACCATTTTCTAACAGCG----AAACGAATCAATTAAT 604 ** * * ** * * ** * * * * ** * * * consensus_1753#0 TATGGCCCCTTGTGGGCAANCNGCACACACCTTCTGGGCCAAACGACNAAGACTTCAATA 900 consensus_1753#1 CTTTCTCCTATGTAAGGCAAAAGTCAGCATTTAGTTAGCAACA----------------- 647 * ** *** * * * ** * * ** * * consensus_1753#0 GNTCGCACTCCNACACAANCCGGCANTCTACCCNAAGAACANGTCTACATCAAAGACAGA 960 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 AGACACACCTGCANNAAACAANAGCGGGGGNNACACAGCACNAGCTCTTGGGNAANCCCG 1020 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 TGCACTANAACACTATAAAACCACCANAGAGGGTCGCACACNCCTACTGGTGATACCCCC 1080 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 CCCCAANCCTATGGCNGGCACANACGAACCATCAACTCCCGCANCACGCGGCAAANCTTC 1140 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 CCCCAACCGGCAGCACACACNATTATCAAACCAGCGGTANTCGACTAANAAACCCGCATT 1200 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 TGGGGAGCTATACAGCGCCCCCCTGGNCCGAAANCTTTGGCGAGCTATNCNGCCACCCAG 1260 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 GTAGCGNTANAAGCATCTACGANNTTCNTGANTGTCATNCGNCCTAGTGGTAGTTAGTAA 1320 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 CTCGACCCCACACACACGTGATTATTNATGGAAAAACAATATTATTCGCGCCGCAACAGC 1380 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 CNAGTCTGCCCGCGCGAGANACCAAAAACACCAGTCAGTGNACAGCGCACTCTTGGTGAA 1440 consensus_1753#1 ------------------------------------------------------------ consensus_1753#0 ATAAG 1445 consensus_1753#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||