These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [ATGCGATCTACAAGGCATTCCCGGAAATTTCGCTACTGCGCGCCCACAGCCCGCCGGCCGAGAACATGATGAAGAATCTCGTCCGCACGCTGTCCCTGCATGGGCACGCCCTATCGTACGCCAGCCCGAAGGACATCCGGGAGTGTATGGAAACGATCATCACTACGTCGGAGAACCCGGACGCTACCCGGAGCGTGCTGAGTGTGCTGCTCGCCAAACCGATGATCCGGGCACAGTACTACTGCTCGCTGTATGCGACCACGCCCGAGCACTTTATGCATTACGCGTTGGCCATACCGATGTACACGCACTTCACCAGCCCCATCCGACGGTATGCCGATTGTCTGGTGCATCGAGTGCTGGCCGCCGCGCTAGCGATCGATGTGCAGCCGAAACGGTCGCCCGAGGAGCTGCAGTGTCTGGCCATGATTTGCAACGAGAAAAAGTACAACGCCAAGTGTGCGGGCGAGGCCAGTTCGCTGCTGTACTTCCGTCACTGGTTGGAGGCTGTGGGAGAGTACGAAACGGAGGCTGCCGTTATGGGATATGCCGCCCATCATATCGAGCTGGTGCTGATACACTCCGGCATTGTGCTGAAGGCTGCCACTAAGAAACTGTCCACCGTTGCCACGGTCGTCTATAAACCGACCGAACCGGTCGCGAGCTGCATGCTGATTCCGAACGATACCTCCATACCACCGGTCGAGTTGACAATCTTTACCAAGGTCCGTGTCACGGTAAAGGTCATAAANGATACGAT] [+] EMBL BX626170 [ATGCGATCTACAAGGCATTCCCGGAAATTTCGCTACTGCGCGCCCACAGCCCGCCGGCCGAGAACATGATGAAGAATCTCGTCCGCACGCTGTCCCTGCATGGGCACGCCCTATCGTACGCCAGCCCGAAGGACATCCGGGAGTGTATGGAAACGATCATCACTACGTCGGAGAACCCGGACGCTACCCGGAGCGTGCTGAGTGTGCTGCTCGCCAAACCGATGATCCGGGCACAGTACTACTGCTCGCTGTATGCGACCACGCCCGAGCACTTTATGCATTACGCGTTGGCCATACCGATGTACACGCACTTCACCAGCCCCATCCGACGGTATGCCGATTGTCTGGTGCATCGAGTGCTGGCCGCCGCGCTAGCGATCGATGTGCAGCCGAAACGGTCGCCCGAGGAGCTGCAGTGTCTGGCCATGATTTGCAACGAGAAAAAGTACAACGCCAAGTGTGCGGGCGAGGCCAGTTCGCTGCTGTACTTCCGTCACTGGTTGGAGGCTGTGGGAGAGTACGAAACGGAGGCTGCCGTTATGGGATATGCCGCCCATCATATCGAGCTGGTGCTGATACACTCCGGCATTGTGCTGAAGGCTGCCACTAAGAAACTGTCCACCGTTGCCACGGTCGTCTATAAACCGACCGAACCGGTCGCGAGCTGCATGCTGATTCCGAACGATACCTCCATACCACCGGTCGAGTTGACAATCTTTACCAAGGTCCGTGTCACGGTAAAGGTCATAAANGATACGAT] consensusID : consensus_1766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GAAATGCCTNAGCAGAATCGGCACGAGGCTGACAAACCGATATCCGGGCACAGTACTANTGCGTCGNGCTGTATTGCGACCACGCCCGAGCACTTTATGCNATTACGCGTTGGGCATACCGATGTAACACGCACTTGNGCAGCCCATCCGAAGGTATNCCGATTGTCTGGTGCATCGCAGTGCTGGCCGCGGCGCTAGNCGATCCGATGTTGCACGAGCGAAAACGGTCGNCCCGAGAGGAGACTAGCAGTGTCTTGGGCACTGATTTGCACACGAGGGAAAAAGAGTTACACCGCCCCACAGGTGGTTNCAGGGGGCGAAGAGCCCAGGTTCGACTTGCCTCGGTACTTTCCNGCCAACGTGGGATNTGGGAAGGGCTTGCTGGGGAAGAAAGTTACCGACNAAACCGGAAGNGGCGTGCCCGGNATCATTGGGGAGTTATTGCCCGGNGCCCATCAGTATTCGGAGGCCTGGGTTGCCTTGA] [+] EMBL BX469352 [GAAATGCCTNAGCAGAATCGGCACGAGGCTGACAAACCGATATCCGGGCACAGTACTANTGCGTCGNGCTGTATTGCGACCACGCCCGAGCACTTTATGCNATTACGCGTTGGGCATACCGATGTAACACGCACTTGNGCAGCCCATCCGAAGGTATNCCGATTGTCTGGTGCATCGCAGTGCTGGCCGCGGCGCTAGNCGATCCGATGTTGCACGAGCGAAAACGGTCGNCCCGAGAGGAGACTAGCAGTGTCTTGGGCACTGATTTGCACACGAGGGAAAAAGAGTTACACCGCCCCACAGGTGGTTNCAGGGGGCGAAGAGCCCAGGTTCGACTTGCCTCGGTACTTTCCNGCCAACGTGGGATNTGGGAAGGGCTTGCTGGGGAAGAAAGTTACCGACNAAACCGGAAGNGGCGTGCCCGGNATCATTGGGGAGTTATTGCCCGGNGCCCATCAGTATTCGGAGGCCTGGGTTGCCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1766#0 ATGCGATCTACAAGGCATTCCCGGAAATTTCGCTACTGCGCGCCCACAGCCCGCCGGCCG 60 consensus_1766#1 ------------------------------------------------------------ consensus_1766#0 AGAACATGATGAAGAATCTCGTCCGCACGCTGTCCCTGCATGGGCACGCCCTATCGTACG 120 consensus_1766#1 ------------------------------------------------------------ consensus_1766#0 CCAGCCCGAAGGACATCCGGGAGTGTATGGAAACGATCATCACTACGTCGGAGAACCCGG 180 consensus_1766#1 ------------------------------------------------------------ consensus_1766#0 ACGCTACCCGGAGCGTGCTGAGTGTGCTGCTCGCCAAACCGATGATCCGGGCACAGTACT 240 consensus_1766#1 GAAATGCCTN-AGCAGAATCGGCACGAGGCT-GACAAACCGAT-ATCCGGGCACAGTACT 57 * ** *** * * * *** * ********* **************** consensus_1766#0 ACTGCT---CGCTGTAT-GCGACCACGCCCGAGCACTTTATGCA-TTACGCGTTGGCCAT 295 consensus_1766#1 ANTGCGTCGNGCTGTATTGCGACCACGCCCGAGCACTTTATGCNATTACGCGTTGGGCAT 117 * *** ******* ************************* *********** *** consensus_1766#0 ACCGATGTA-CACGCACTTCACCAGCCCCATCCGACGGTATGCCGATTGTCTGGTGCATC 354 consensus_1766#1 ACCGATGTAACACGCACTTGNGCAGCCC-ATCCGAAGGTATNCCGATTGTCTGGTGCATC 176 ********* ********* ****** ****** ***** ****************** consensus_1766#0 G-AGTGCTGGCCGCCGCGCTAGC-GATC-GATGT-GCA---GCCGAAACGGTCGCCC--- 404 consensus_1766#1 GCAGTGCTGGCCGCGGCGCTAGNCGATCCGATGTTGCACGAGCGAAAACGGTCGNCCCGA 236 * ************ ******* **** ***** *** ** ********* ** consensus_1766#0 GAGGAGCT--GCAGTGTCT--GGCCATGATTTGCA-ACGAGAAAAAG-----TACAACGC 454 consensus_1766#1 GAGGAGACTAGCAGTGTCTTGGGCACTGATTTGCACACGAGGGAAAAAGAGTTACACCGC 296 ****** ********* *** ********* ***** *** **** *** consensus_1766#0 CAAGTGTGCGGGCGAGGCCAGTTCGCTGCTGTACTTCCGTCACTGGTTGGAGGCTGTGGG 514 consensus_1766#1 CCCACAGGTGGTTNCAGGGGGCGAAGAGCC-CAGGTTCGACTTGCCTCGGTACTTTCCNG 355 * * ** * * ** * * ** * * ** * * consensus_1766#0 AGAGTACGAAACGGAGGCTGCCGTTATGGGATATGCCGCCCATCATATCGAGCTGGTGCT 574 consensus_1766#1 CCAACGTGGGATNTGGGAAGGGCTTGCTGGGGAAGAAAGTTACCG-ACNAAACCGGAAGN 414 * * * ** * ** ** * * * * * * * ** consensus_1766#0 GATACACTCCGGCATTGTGCTGAAGGCTGCCACTAAGAAACTGTCCACCGTTG----CCA 630 consensus_1766#1 GGCGTGC-CCGGNATCAT-TGGGGAGTTATTGCCCGGNGCCCATCAGTATTCGGAGGCCT 472 * * **** ** * * * * * * * ** * * ** consensus_1766#0 CGGTCGTCTATAAACCGACCGAACCGGTCGCGAGCTGCATGCTGATTCCGAACGATACCT 690 consensus_1766#1 GGGTTGCCTTGA------------------------------------------------ 484 *** * ** * consensus_1766#0 CCATACCACCGGTCGAGTTGACAATCTTTACCAAGGTCCGTGTCACGGTAAAGGTCATAA 750 consensus_1766#1 ------------------------------------------------------------ consensus_1766#0 ANGATACGAT 760 consensus_1766#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||