These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGGAAAGTGTTACGCGCAGCTGTTTTGCAAGCTAGAGAATGTTTTGGCTAGTCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAGGTACCATCAACAACGGCAGAAGCTGCTGGCTATTCGGGCTAAATTTGGTGGCCCAGAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTTCAAAGACAAAAGTATTCCAGATATATTTGACCTCGTTGTTGGACTTCACAAACGCTACGGCCAGGATGTGGCCATTATTGGTGCTTTTAACGATTTGGTGCTAGATCTGTCCAGCTCCAAGAATGTGGAAAAGATACTGCTTGCGAAAACCACGAAGAAATCGTTCGTGTACGATTATCTTGAGCCATGGTTGGGCACAGGGCTGCTGATCTCGTTCGGCGAGAAGTGGTTCCAGCGGCGCAAGATAATAACGCCAGCGTTTCACTTCAAGATATTGGACCAGTTTATTGACGTGTTCAATGAGGAAGCGGATGTATTGATCTCCAAGCTGGAGAAGCATGTTGGAAAGGGAGAGTTTGATATCTACGACTATGTGACGCTGTACGCGTTGGATAGTATCTGTGCAACTTCAATGGGTGTTCGCATCCATGCACAGGACGATCCACAACAACGAGTACGCACAAGCCGTCAAG] [+] EMBL BM653990 [CCGGAAAGTGTTACGCGCAGCTGTTTTGCAAGCTAGAGAATGTTTTGGCTAGTCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAGGTACCATCAACAACGGCAGAAGCTGCTGGCTATTCGGGCTAAATTTGGTGGCCCAGAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTTCAAAGACAAAAGTATTCCAGATATATTTGACCTCGTTGTTGGACTTCACAAACGCTACGGCCAGGATGTGGCCATTATTGGTGCTTTTAACGATTTGGTGCTAGATCTGTCCAGCTCCAAGAATGTGGAAAAGATACTGCTTGCGAAAACCACGAAGAAATCGTTCGTGTACGATTATCTTGAGCCATGGTTGGGCACAGGGCTGCTGATCTCGTTCGGCGAGAAGTGGTTCCAGCGGCGCAAGATAATAACGCCAGCGTTTCACTTCAAGATATTGGACCAGTTTATTGACGTGTTCAATGAGGAAGCGGATGTATTGATCTCCAAGCTGGAGAAGCATGTTGGAAAGGGAGAGTTTGATATCTACGACTATGTGACGCTGTACGCGTTGGATAGTATCTGTGCAACTTCAATGGGTGTTCGCATCCATGCACAGGACGATCCACAACAACGAGTACGCACAAGCCGTCAAG] consensusID : consensus_1767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [AATCGCCCNAGGTTAAAAGTGTTACGCGCAGCTATTTTGCAGCTAGAGAATGTTTTGGCGTAGATCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAAGTACCATCAGCAACGGAGAAGCTGCTGGCTATTCGGGCTAAACTTTGGTGGCCCACNCAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTCTCCAAAGACACAAAGTATTCCAGATATATTTGACCTCGTTGTTGGGCTTCACAAACGCTACGGTCACGGATGTGGCCATTATTGGTGCTTTCAACGCATAATGGTGCTAGATACTGTCCAGCTCCAAGAAATGTGGAANAAGATACATAGCTATGCCGAAAACCCACGNAAGAAATACGACAGCGTAACGATCAATACTTGAGNCCANAGGTATGGGCACANNNGAGGCTGTGATACTCGCGTGTCGGGGCGNNAGNCGAACATGGTTTCCCAAGCCGGGCGGCACAGGATAACTAACGCCAGCGGTTATCACTTCAAGCATATTGGACCAGGATTTTATTGACGTGGTTCAACTGAGGAAGCGGCATGGTATTGAG] [+] EMBL AL693970 [AATCGCCCNAGGTTAAAAGTGTTACGCGCAGCTATTTTGCAGCTAGAGAATGTTTTGGCGTAGATCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAAGTACCATCAGCAACGGAGAAGCTGCTGGCTATTCGGGCTAAACTTTGGTGGCCCACNCAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTCTCCAAAGACACAAAGTATTCCAGATATATTTGACCTCGTTGTTGGGCTTCACAAACGCTACGGTCACGGATGTGGCCATTATTGGTGCTTTCAACGCATAATGGTGCTAGATACTGTCCAGCTCCAAGAAATGTGGAANAAGATACATAGCTATGCCGAAAACCCACGNAAGAAATACGACAGCGTAACGATCAATACTTGAGNCCANAGGTATGGGCACANNNGAGGCTGTGATACTCGCGTGTCGGGGCGNNAGNCGAACATGGTTTCCCAAGCCGGGCGGCACAGGATAACTAACGCCAGCGGTTATCACTTCAAGCATATTGGACCAGGATTTTATTGACGTGGTTCAACTGAGGAAGCGGCATGGTATTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1767#0 -----------CCGGAAAGTGTTACGCGCAGCTGTTTTGCAAGCTAGAGAATGTTTTGGC 49 consensus_1767#1 AATCGCCCNAGGTTAAAAGTGTTACGCGCAGCTATTTTGCA-GCTAGAGAATGTTTTGGC 59 ****************** ******* ****************** consensus_1767#0 -TAG-TCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAGGTACCATCAACAACG 107 consensus_1767#1 GTAGATCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAAGTACCATCAGCAACG 119 *** *************************************** ********* ***** consensus_1767#0 GCAGAAGCTGCTGGCTATTCGGGCTAAA-TTTGGTGGCCCAGA--GTCGAGCTACTTTCT 164 consensus_1767#1 G-AGAAGCTGCTGGCTATTCGGGCTAAACTTTGGTGGCCCACNCAGTCGAGCTACTTTCT 178 * ************************** ************ *************** consensus_1767#0 TGGGACGTTTTATTTGTT--CAAAGACA-AAAGTATTCCAGATATATTTGACCTCGTTGT 221 consensus_1767#1 TGGGACGTTTTATTTGTCTCCAAAGACACAAAGTATTCCAGATATATTTGACCTCGTTGT 238 ***************** ******** ******************************* consensus_1767#0 TGGACTTCACAAACGCTACGGCCA-GGATGTGGCCATTATTGGTGCTTTTAACGATT--T 278 consensus_1767#1 TGGGCTTCACAAACGCTACGGTCACGGATGTGGCCATTATTGGTGCTTTCAACGCATAAT 298 *** ***************** ** ************************ **** * * consensus_1767#0 GGTGCTAGAT-CTGTCCAGCTCCAAGAA-TGTGGAAAA-GATAC-TGCTTGCG----AAA 330 consensus_1767#1 GGTGCTAGATACTGTCCAGCTCCAAGAAATGTGGAANAAGATACATAGCTATGCCGAAAA 358 ********** ***************** ******* * ***** * * * *** consensus_1767#0 ACCACGAA-GAAAT-CGTTCGTGTA-CGATTAT--CTTGAGCC--ATGGT-TGGGCACAG 382 consensus_1767#1 CCCACGNAAGAAATACGACAGCGTAACGATCAATACTTGAGNCCANAGGTATGGGCACAN 418 ***** * ***** ** * *** **** * ****** * *** ******** consensus_1767#0 GG----CTGCTGATCTCGTTCG-----GCGAGAAG------TGGTTCC--------AGCG 419 consensus_1767#1 NNGAGGCTGTGATACTCGCGTGTCGGGGCGNNAGNCGAACATGGTTTCCCAAGCCGGGCG 478 *** **** * *** * ***** * *** consensus_1767#0 GCGCAAGATAA-TAACGCCAGCGTTT--CACTTCAAG-ATATTGGACCAG---TTTATTG 472 consensus_1767#1 GCACAGGATAACTAACGCCAGCGGTTATCACTTCAAGCATATTGGACCAGGATTTTATTG 538 ** ** ***** *********** ** ********* ************ ******* consensus_1767#0 ACGTG-TTCAA-TGAGGAAGCGG-ATG-TATTGATCTCCAAGCTGGAGAAGCATGTTGGA 528 consensus_1767#1 ACGTGGTTCAACTGAGGAAGCGGCATGGTATTGAG------------------------- 573 ***** ***** *********** *** ****** consensus_1767#0 AAGGGAGAGTTTGATATCTACGACTATGTGACGCTGTACGCGTTGGATAGTATCTGTGCA 588 consensus_1767#1 ------------------------------------------------------------ consensus_1767#0 ACTTCAATGGGTGTTCGCATCCATGCACAGGACGATCCACAACAACGAGTACGCACAAGC 648 consensus_1767#1 ------------------------------------------------------------ consensus_1767#0 CGTCAAG 655 consensus_1767#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||