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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CCGCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACATACACTGATACAATCAAGCAAACGTACATCTCAATTATGACCGTAATATTACTATCCTCTTTTACTGGCAGACCAATAAACACTAACACACACAAACATATAAACAGGACAACAGAACTAATAAACTGAGCAACAATACAGGGTTTTCCAAGTTACTTTCGAATGTAAACATTGTTTTCTTTCGCGAACAAGAAGTTTTTCCACATCACTCTGTTATTTCGTTTCCTTCACGATAATTTTTAATTTCCTCAGAGTGATTTTTAACACTTCAATGTTTTCAACCCCCGGTAAAAAAAAAACAATTGCAACAGAATCGTTGAAGTGTTGAAAACCATACTGAGGAAATTAAAAATTATTGGTGATGGAAGTGAAATATCAGAGTGCTGTAGAATAACATTGTTGCACACGGTGGAAAAACAGTGTGTACATTTCGAAAGTGTCTTGGGAAACCCCTGTAAAACGCCATAGTTTAAATTGTAGCTAA]
[+] EMBL BM605160 [CCGCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACATACACTGATACAATCAAGCAAACGTACATCTCAATTATGACCGTAATATTACTATCCTCTTTTACTGGCAGACCAATAAACACTAACACACACAAACATATAAACAGGACAACAGAACTAATAAACTGAGCAACAATACAGGGTTTTCCAAGTTACTTTCGAATGTAAACATTGTTTTCTTTCGCGAACAAGAAGTTTTTCCACATCACTCTGTTATTTCGTTTCCTTCACGATAATTTTTAATTTCCTCAGAGTGATTTTTAACACTTCAATGTTTTCAACCCCCGGTAAAAAAAAAACAATTGCAACAGAATCGTTGAAGTGTTGAAAACCATACTGAGGAAATTAAAAATTATTGGTGATGGAAGTGAAATATCAGAGTGCTGTAGAATAACATTGTTGCACACGGTGGAAAAACAGTGTGTACATTTCGAAAGTGTCTTGGGAAACCCCTGTAAAACGCCATAGTTTAAATTGTAGCTAA]
consensusID : consensus_1783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[AGCGACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACACAAACACACACGAACACACTGCTAGTGATTACTGAATACTATTAACGATTCCGATGCCTACCTCTGACGGGAGGAGGGAAGCACACCACCACGTGGAACTGAACTACTGTGATTTCCTTTTGTTTTCTGCTTAACAAAAACAAAAACAAAACAAAAACGATTTTTCCCCCCGTTTTGGACCCCTTATACTCTACTGATAGCTCCCGAGAGCCAACTCTCTCCCCCCATCTAGGTTGTTTGTTCAACATTGCTCAGCTCGATGATGACAGCTCGTTGATTGTTTAAAACCACTTCGTTGTTGAGTTCGTTATTTAGAAAAATTGAATTGACTTTCGTGTGAGACAAGC]
[+] EMBL BX615353 [AGCGACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACACAAACACACACGAACACACTGCTAGTGATTACTGAATACTATTAACGATTCCGATGCCTACCTCTGACGGGAGGAGGGAAGCACACCACCACGTGGAACTGAACTACTGTGATTTCCTTTTGTTTTCTGCTTAACAAAAACAAAAACAAAACAAAAACGATTTTTCCCCCCGTTTTGGACCCCTTATACTCTACTGATAGCTCCCGAGAGCCAACTCTCTCCCCCCATCTAGGTTGTTTGTTCAACATTGCTCAGCTCGATGATGACAGCTCGTTGATTGTTTAAAACCACTTCGTTGTTGAGTTCGTTATTTAGAAAAATTGAATTGACTTTCGTGTGAGACAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1783#0 -------------------CCGCCTACTACTACTAATACTACAGCTACTACTACACCTAC 41
consensus_1783#1 AGCGACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTAC 60
* **************************************
consensus_1783#0 TATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAG 101
consensus_1783#1 TATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAG 120
************************************************************
consensus_1783#0 AAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTT 161
consensus_1783#1 AAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTT 180
************************************************************
consensus_1783#0 ACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACAC 221
consensus_1783#1 ACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACAC 240
************************************************************
consensus_1783#0 ACACATACACTGATACAATCAAGCAAACGTACATCTCAATTATGACCGTAATATTACTAT 281
consensus_1783#1 ACACACAAAC--ACACA------CGAACACAC-TGCTAGTGATTACTG-AATACTATTAA 290
***** * ** * *** * *** ** * * * ** ** * **** ** **
consensus_1783#0 CCTCTTTTACTGGCAGACCAATAAACACTAACACACACAAACATATAAACAGG-ACAACA 340
consensus_1783#1 CGATTCCGAT--GCCTACCTCTG---ACGGGAGGAGGGAAGCACACCACCACGTGGAACT 345
* * * ** *** * ** * ** ** * * ** * ***
consensus_1783#0 GAACTAATAAACTGAGCAACAATACAGGGTTTTCCAAGTTACTTTCGAATGTAAACATTG 400
consensus_1783#1 GAACTACTGTGATTTCCTTTTGTTTTCTGCTTAACAAAAACAAAAACAAAACAAAAACGA 405
****** * * * * * ** *** ** *** *
consensus_1783#0 TTTTCTTTCGCGAACAAGAAGTTTTTCCACATCACTCTGTTATTTCGTTTCCTTCACGAT 460
consensus_1783#1 TTTTTCCCCCCGTTTTGGA-----CCCCTTAT-ACTCTACTGAT--AGCTCCCGAGAGCC 457
**** * ** ** ** ** ***** * * *** *
consensus_1783#0 AATTTTTAATTTCCTCAGAGTGATTTTTAACACTTCAATGTT-TTCAACCCC-CGGTAAA 518
consensus_1783#1 AACTCTC--TCCCCCCATCTAGGTTGTTTG---TTCAACATTGCTCAGCTCGATGATGAC 512
** * * * ** ** * ** ** ***** ** *** * * * * *
consensus_1783#0 AAAAAAACAATTGCAACAGAATCGTTGAAGTGTTGAAAACCATACTGAGGAAATTAAAAA 578
consensus_1783#1 AGCTCGTTGATTGTT-TAAAACCACTTCGTTGTTGAGTTCGTTATTTAGAAAAATTGAAT 571
* **** * ** * * ****** * ** * ** *** * **
consensus_1783#0 TTATTGGTGATGGAAGTGAAATATCAGAGTGCTGTAGAATAACATTGTTGCACACGGTGG 638
consensus_1783#1 TGACTTTCG-TGTGAGACAAGC-------------------------------------- 592
* * * * ** ** **
consensus_1783#0 AAAAACAGTGTGTACATTTCGAAAGTGTCTTGGGAAACCCCTGTAAAACGCCATAGTTTA 698
consensus_1783#1 ------------------------------------------------------------
consensus_1783#0 AATTGTAGCTAA 710
consensus_1783#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||