These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTATGCTTTTAACAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTATTAAGACCCGTCGTTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTTGATATTTTACTTATACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAATAAGCTATATTCAATCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCTATAAAATATAAGAGAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCATGGTCATGTGTCCAATAAACTGTGTCATAACTT] [+] EMBL BX622523 [CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTATGCTTTTAACAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTATTAAGACCCGTCGTTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTTGATATTTTACTTATACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAATAAGCTATATTCAATCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCTATAAAATATAAGAGAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCATGGTCATGTGTCCAATAAACTGTGTCATAACTT] consensusID : consensus_1793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACGAGAAAATTATATCATAATTGGCTCATTAAGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAAAAAANAAAAACAGGCATGTTTNACCTC] [-] EMBL AL694148 [TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACGAGAAAATTATATCATAATTGGCTCATTAAGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAAAAAANAAAAACAGGCATGTTTNACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1793#0 ------------------------------------------------------------ consensus_1793#1 TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACG 60 consensus_1793#0 ------------CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGC 48 consensus_1793#1 AGAAAATTATATCATAATTGGCTCATTAAG-TCTTATCCTGCCACTTGGTTGCTACCTGC 119 ****************** ***************************** consensus_1793#0 CCTTATGCTTTTAAC-AAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTAC 107 consensus_1793#1 CCTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTAC 179 ***** ********* ******************************************** consensus_1793#0 AAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACAT 167 consensus_1793#1 AAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACAT 239 ************************************************************ consensus_1793#0 TCTGCTCCATGAATGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATT 227 consensus_1793#1 TCTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATT 299 *********************************** ************************ consensus_1793#0 CCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACA 287 consensus_1793#1 CCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACA 359 ************************************************************ consensus_1793#0 AGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTG 347 consensus_1793#1 AGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTG 419 ************************************************************ consensus_1793#0 CGATCAAAACTACACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTA 407 consensus_1793#1 CGATCAAAACTACACCAAACCAGCTAAAAAAAAAAA-AANAAAAACAGGCATGTTTNACC 478 ********************************** ** *** * consensus_1793#0 TTAAGACCCGTCGTTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTT 467 consensus_1793#1 TC---------------------------------------------------------- 480 * consensus_1793#0 GATATTTTACTTATACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAAT 527 consensus_1793#1 ------------------------------------------------------------ consensus_1793#0 AAGCTATATTCAATCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCT 587 consensus_1793#1 ------------------------------------------------------------ consensus_1793#0 ATAAAATATAAGAGAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCAT 647 consensus_1793#1 ------------------------------------------------------------ consensus_1793#0 GGTCATGTGTCCAATAAACTGTGTCATAACTT 679 consensus_1793#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||