cluster # 1798

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Anopheles gambiae
cluster # 1798 cluster # 1798 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1798#0 length = 982 sequences # 1

consensus_1798#1 length = 613 sequences # 1

consensusID : consensus_1798#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 982
fasta sequence

                              [CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGATTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGGGCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGCCTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAACACTGGGGATTCGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTACCTGGTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAATTACCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAGGTTTGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGAGTTTATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCNTTGGGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNGAAGGGGGGTTTAATTTTTTGGGCGATATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGCGGAGAGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAACTGGACCCCCCACGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGGTAATTTTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAAGACCNTAGNTAGTGACGAAAANCCAGG]

[+] EMBL AL694165             [CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGATTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGGGCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGCCTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAACACTGGGGATTCGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTACCTGGTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAATTACCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAGGTTTGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGAGTTTATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCNTTGGGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNGAAGGGGGGTTTAATTTTTTGGGCGATATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGCGGAGAGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAACTGGACCCCCCACGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGGTAATTTTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAAGACCNTAGNTAGTGACGAAAANCCAGG]




>consensus_1798#0
CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGC
AGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCG
TCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGA
TTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGG
GCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGC
CTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAACACTGGGGATT
CGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTACCTG
GTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAATTA
CCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAGGTT
TGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGAGTT
TATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCNTTG
GGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNGAAG
GGGGGTTTAATTTTTTGGGCGATATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGCGGAG
AGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAACTGG
ACCCCCCACGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGGTAATT
TTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAAGACCN
TAGNTAGTGACGAAAANCCAGG

consensusID : consensus_1798#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CTGTGGTTGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGCGCCGTGTGTTGATCGCCCTGCCGCTCCACACCCGTCCAGTGGCCGTTCTGCGCATCACGAGCCAGCTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCGACAGATTCACGCACTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGGCATGATGCCGGCGTTGGCTTTCGCTACCGTCTGCACATAGAACGTGAGCGTATTGCGGAAGGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCGTCGCCGACCACGATGCTGATTAACAACAGCCCGGTGACGGTGTACCACTCGCTAGTCGTGCCCGACCGGGCGGGCCAGCACTCGCAGCTGCTCACATCGGGCGGTGTGCGCGTAGCGTTCGAGCTGCTGCTGCGCCTGCCCGACCGACGCTACCGGATCG]

[+] EMBL BX624901             [CTGTGGTTGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGCGCCGTGTGTTGATCGCCCTGCCGCTCCACACCCGTCCAGTGGCCGTTCTGCGCATCACGAGCCAGCTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCGACAGATTCACGCACTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGGCATGATGCCGGCGTTGGCTTTCGCTACCGTCTGCACATAGAACGTGAGCGTATTGCGGAAGGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCGCCGGCAGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCGTCGCCGACCACGATGCTGATTAACAACAGCCCGGTGACGGTGTACCACTCGCTAGTCGTGCCCGACCGGGCGGGCCAGCACTCGCAGCTGCTCACATCGGGCGGTGTGCGCGTAGCGTTCGAGCTGCTGCTGCGCCTGCCCGACCGACGCTACCGGATCG]




>consensus_1798#1
CTGTGGTTGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGC
GCCGTGTGTTGATCGCCCTGCCGCTCCACACCCGTCCAGTGGCCGTTCTGCGCATCACGA
GCCAGCTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCG
ACAGATTCACGCACTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGG
CATGATGCCGGCGTTGGCTTTCGCTACCGTCTGCACATAGAACGTGAGCGTATTGCGGAA
GGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCGCCGGCAGCCG
CAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCGTCGAT
CCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCGTCGCCGACCACGATGCTGATTAACAAC
AGCCCGGTGACGGTGTACCACTCGCTAGTCGTGCCCGACCGGGCGGGCCAGCACTCGCAG
CTGCTCACATCGGGCGGTGTGCGCGTAGCGTTCGAGCTGCTGCTGCGCCTGCCCGACCGA
CGCTACCGGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1798#0      CCCGAGGTTAAAGTCACTTTCTCATTCTGCTGAATCGCAAACGGTTGACAGAGCGCCGGC 60
consensus_1798#1      ------------------------------------------------------------
                                                                                  

consensus_1798#0      AGCCGCAAGCATTCCAGCTCGATGCACCGTTCGATCCGTCCCGGTTTAACTTTACCCGCG 120
consensus_1798#1      ------------------------------------------------------------
                                                                                  

consensus_1798#0      TCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCACCTGTCGCCGACCACTGATGCTTGA 180
consensus_1798#1      ------------------------------------------------------------
                                                                                  

consensus_1798#0      TTAACAACAGCCCTGGTGACTGGTGTAACACATCTGCTAGTCNGTGCCCTGACTGGGCGG 240
consensus_1798#1      ------------------------------------------------------------
                                                                                  

consensus_1798#0      GCAGCACTCGCAGGCTGCTCACATCGGGGCGGGTGTTGCGCGTTAAGCGGTATCGGAGGC 300
consensus_1798#1      -----------------------------------------------------CTGTGGT 7
                                                                           * * ** 

consensus_1798#0      CTTTGGCTTTGCTTGCTGGCCTGNCCCTGGAAAACCTGAACTGCTTTAA---CACTGGGG 357
consensus_1798#1      TGCTGTTGTTGTTTACTCCGCCAGTGCCGGTTGATGACAGCCGGTCCGGACGCGCCGTGT 67
                         **   *** ** **   *     * **   *    * * * *       * * * * 

consensus_1798#0      ATTCGNGGTTTTACCAAACAAAGGTTACCCCCGGTGTTGGCCATGGCAAAGGCCGGTTAC 417
consensus_1798#1      GTTGATCGCCCTGCCGCTCCACA--CCCGTCCAGTGGCCGTTCTGCGCATCACGAGCCAG 125
                       **    *   * **   * *      *  ** ***   *   **   *   *  *  * 

consensus_1798#0      CTGGTGCACAAAACGCCAATTCCTTGGNATCTTTGGCCAATTCTTGGCTACCCCGGGGAA 477
consensus_1798#1      CTGCTTCAACATGCGACAAACACATCCCACCACGTACGAGCTGACCAGCTCGTCGACAGA 185
                      *** * **  *  ** ***   * *   * *     * *  *        *  **    *

consensus_1798#0      TTACCGGAAGTTAAACCAGTGGACTGGACTTCCTTAAAGNGGATTTGGACCAAAGGACAG 537
consensus_1798#1      TTCACGCA--CTGATCCAGAACTGCAACGGCTGCTAGAATCGACCTGGTCCGAACGGCAT 243
                      **  ** *   * * ****               ** *   **  *** ** ** * ** 

consensus_1798#0      GTTTGCCNGGGGGAAAAAACACTTTTGGCGTTATTAACACCACCCAGATTATGCACNCGA 597
consensus_1798#1      GAT-GCCGGCGTTGG------CTTT---CGCTACCGTCTGCACATAGAACGTGAGCGTA- 292
                      * * *** * *          ****   ** **    *  ***  ***   **  *    

consensus_1798#0      GTTTATGGGCACAACCATTACCCANGGCGTTTTGACNTNTAGCGAAAACACCAGAGGGCN 657
consensus_1798#1      --TTGCGGAAGGAAAGTTCAACTTTCTCATTCTGCTGAATCGCAAACGGCTGACAGAGCG 350
                        **  **    **   * * *     * ** **     * ** **      * ** ** 

consensus_1798#0      TTGGGGCCTGGAGGAANTTCNAATTACCTNTTTGGAGCACACGGGGGACACNCCAAAGNG 717
consensus_1798#1      CCGGCAGCCGCAAGCATTCCA--------GCTCGATGCAC-CGTTCGATCCGTCCC---- 397
                        **   * * * * * * *           * *  **** **   **  *  *      

consensus_1798#0      AAGGGGGGTTTAATTTTTTGGGCGAT-ATTTACCNGAGTTTTAGGCCTTTTNNGGCTAGC 776
consensus_1798#1      ------GGTTTAACTTTACCCGCGTCGATCCGGCCGAGGTGCAGCTCGAGCTGGTCGCAC 451
                            ******* ***    ***   **    * *** *  **  *      * *   *

consensus_1798#0      GGAGAGAAGNCCGCCAAAAAAAGCACCCAAACCGAGGCAGGAAAGAGCCTTTTGGGGNAA 836
consensus_1798#1      CGTC-GCCGACCACGATGCTGATTAACAACAGCCCGGTGACGGTGTACCACTCGCTAGTC 510
                       *   *  * ** * *     *  * * * * *  **       *  **  * *      

consensus_1798#0      CTGGACCCCCCA-CGGTNTACCTTTNGCCTACANAGTAATCTGTCNGTGAGCCTTTAGGG 895
consensus_1798#1      GTGCCCGACCGGGCGGGCCAGCACTCGCAGCTGCTCACATCGGGCGGTGTGC-----GCG 565
                       **  *  **   ***   * *  * **          *** * * *** **     * *

consensus_1798#0      TAATTTTGGAAACAACGTGGCTTTTGCAATTTAACCGAAAGGTGAGCTGGACCGTTTAAA 955
consensus_1798#1      TAGCGTTCGAGCTGCTGCTGCGCCTGC---CCGACCGACGC---TACCGGATCG------ 613
                      **   ** **      *  **   ***      *****        * *** **      

consensus_1798#0      GACCNTAGNTAGTGACGAAAANCCAGG 982
consensus_1798#1      ---------------------------