These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CCGCGGACGCGTGGGTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGTTATGTTTTTGAGAAGAACGCTTGGTTTCAGGTTACACACAATTAATAAACAATCACACACACAGCTAACAGACAAACAATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAAAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACAAAATGTCAAAATTTCAACGGAAGATGATGATGCTGGAAAACGTTGTTTATTGTTGATTTGCTCAAAACAAAATTGAAATCAAAAAGGAAAACTAAAACTAACGCAAAATTATTAACGATAGCCAACGACGAAAACGAGGAAAAAACACACACTCCAGATAGGTGCGTATGCGAAGCATGGTTTGAACTTTGATATAGTAAACCCTTTCA] [+] EMBL BM634791 [CCGCGGACGCGTGGGTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGTTATGTTTTTGAGAAGAACGCTTGGTTTCAGGTTACACACAATTAATAAACAATCACACACACAGCTAACAGACAAACAATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAAAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACAAAATGTCAAAATTTCAACGGAAGATGATGATGCTGGAAAACGTTGTTTATTGTTGATTTGCTCAAAACAAAATTGAAATCAAAAAGGAAAACTAAAACTAACGCAAAATTATTAACGATAGCCAACGACGAAAACGAGGAAAAAACACACACTCCAGATAGGTGCGTATGCGAAGCATGGTTTGAACTTTGATATAGTAAACCCTTTCA] consensusID : consensus_1801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGGAAATATATACGAGATGCGATATGAATCGCTACTATTTTAGGCCATACTTTGGAAACCATTAAATCAATTTAATATGAATGTATATAAATAACTTTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGGTATGTTTTTGAGAAGAACGCTTGGATTCAGGTTACACACCATTAATAAACAATCACACACACAGCTAACAGACAAACTATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAGAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACCAAATGTCAAAATTTCAGCGGAAGA] [+] EMBL BM647841 [CCGGAAATATATACGAGATGCGATATGAATCGCTACTATTTTAGGCCATACTTTGGAAACCATTAAATCAATTTAATATGAATGTATATAAATAACTTTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGGTATGTTTTTGAGAAGAACGCTTGGATTCAGGTTACACACCATTAATAAACAATCACACACACAGCTAACAGACAAACTATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAGAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACCAAATGTCAAAATTTCAGCGGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1801#0 ------------------------------------------------------------ consensus_1801#1 CCGGAAATATATACGAGATGCGATATGAATCGCTACTATTTTAGGCCATACTTTGGAAAC 60 consensus_1801#0 ---------------------CCGCGGACGCGTGGGTT--AACGGGCATTTCGATGAACG 37 consensus_1801#1 CATTAAATCAATTTAATATGAATGTATATAAATAACTTTTAACGGGCATTTCGATGAACG 120 * * * ** ******************** consensus_1801#0 CTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCA 97 consensus_1801#1 CTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCA 180 ************************************************************ consensus_1801#0 AGTGTTTGTTTAAAGTTATGTTTTTGAGAAGAACGCTTGGTTTCAGGTTACACACAATTA 157 consensus_1801#1 AGTGTTTGTTTAAAGGTATGTTTTTGAGAAGAACGCTTGGATTCAGGTTACACACCATTA 240 *************** ************************ ************** **** consensus_1801#0 ATAAACAATCACACACACAGCTAACAGACAAACAATTTGAAAGTAATACGGAAAGAAACA 217 consensus_1801#1 ATAAACAATCACACACACAGCTAACAGACAAACTATTTGAAAGTAATACGGAAAGAAACA 300 ********************************* ************************** consensus_1801#0 GCCAAGGAAAAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAAT 277 consensus_1801#1 GCCAAGGAAGAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAAT 360 ********* ************************************************** consensus_1801#0 CCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCA 337 consensus_1801#1 CCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCA 420 ************************************************************ consensus_1801#0 AACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGC 397 consensus_1801#1 AACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGC 480 ************************************************************ consensus_1801#0 TTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATA 457 consensus_1801#1 TTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATA 540 ************************************************************ consensus_1801#0 AGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACAAAATGTCAAAATTTCAAC 517 consensus_1801#1 AGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACCAAATGTCAAAATTTCAGC 600 ***************************************** **************** * consensus_1801#0 GGAAGATGATGATGCTGGAAAACGTTGTTTATTGTTGATTTGCTCAAAACAAAATTGAAA 577 consensus_1801#1 GGAAGA------------------------------------------------------ 606 ****** consensus_1801#0 TCAAAAAGGAAAACTAAAACTAACGCAAAATTATTAACGATAGCCAACGACGAAAACGAG 637 consensus_1801#1 ------------------------------------------------------------ consensus_1801#0 GAAAAAACACACACTCCAGATAGGTGCGTATGCGAAGCATGGTTTGAACTTTGATATAGT 697 consensus_1801#1 ------------------------------------------------------------ consensus_1801#0 AAACCCTTTCA 708 consensus_1801#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||