cluster # 1811

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Anopheles gambiae
cluster # 1811 cluster # 1811 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1811#0 length = 594 sequences # 1

consensus_1811#1 length = 423 sequences # 1

consensusID : consensus_1811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAAGTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAATTATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCCTTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAGCTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACCAGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACCCGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGCATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCATTTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTCCTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC]

[+] EMBL BX618903             [TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAAGTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAATTATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCCTTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAGCTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACCAGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACCCGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGCATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCATTTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTCCTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC]




>consensus_1811#0
TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAA
GTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAAT
TATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCC
TTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAG
CTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACC
AGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACC
CGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGC
ATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCAT
TTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTC
CTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC

consensusID : consensus_1811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCCTTGCTGCAAAGTTTCCACTTGTTGGAAAATGGCTTCTACACTCATTTTTTCTCCAAAAAGCTTTATTAAATTTAATTTAACATTCGCCCACGTATCATCTAATATGCGACTGAAAAATCCAGCAGCATTTCCTTTTAATTTGAACATTACCGTTCTAATTAAATCCTCTTCCGATTCGCCTCTTGGTATCTGATTCGCAAAATATTCTACTTGAAATAAAAATCCATCTAATTCCTTTGCAGCTCCGTGATATTCAGGAATGCATAGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCATTTTTGAAAATGACGCGTTCAACGCTCTATCGATTTCAAGGCTTTGATTTAATAATTCTCCTTTGAGAACTTGGAGGCGTTTTTGGTAA]

[+] EMBL BX626703             [CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCCTTGCTGCAAAGTTTCCACTTGTTGGAAAATGGCTTCTACACTCATTTTTTCTCCAAAAAGCTTTATTAAATTTAATTTAACATTCGCCCACGTATCATCTAATATGCGACTGAAAAATCCAGCAGCATTTCCTTTTAATTTGAACATTACCGTTCTAATTAAATCCTCTTCCGATTCGCCTCTTGGTATCTGATTCGCAAAATATTCTACTTGAAATAAAAATCCATCTAATTCCTTTGCAGCTCCGTGATATTCAGGAATGCATAGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCATTTTTGAAAATGACGCGTTCAACGCTCTATCGATTTCAAGGCTTTGATTTAATAATTCTCCTTTGAGAACTTGGAGGCGTTTTTGGTAA]




>consensus_1811#1
CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCCTTGCTGCAAAGTTTCCACTTGTTGG
AAAATGGCTTCTACACTCATTTTTTCTCCAAAAAGCTTTATTAAATTTAATTTAACATTC
GCCCACGTATCATCTAATATGCGACTGAAAAATCCAGCAGCATTTCCTTTTAATTTGAAC
ATTACCGTTCTAATTAAATCCTCTTCCGATTCGCCTCTTGGTATCTGATTCGCAAAATAT
TCTACTTGAAATAAAAATCCATCTAATTCCTTTGCAGCTCCGTGATATTCAGGAATGCAT
AGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCATTTTTGAAAATGACGCGTTCAACGCT
CTATCGATTTCAAGGCTTTGATTTAATAATTCTCCTTTGAGAACTTGGAGGCGTTTTTGG
TAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1811#0      TAAGTGTTTGTTCATTCTCGCCAGTGTTTGCAGTTCCGAATTTCTCAAACCAGCTAAAAA 60
consensus_1811#1      ------------------------------------------------------------
                                                                                  

consensus_1811#0      GTGTATTTTTAGGTTTCGTATGGCGTACGAGTCCTCGGTGTTGTTTTTATCTGCATTAAT 120
consensus_1811#1      ------------------------------------------------------------
                                                                                  

consensus_1811#0      TATGTTTTCTTTGAGTTTAAGAACCCTTTCTTTGAATGCGGAAAAAGCTTCATTTCCCCC 180
consensus_1811#1      -------------------------CTTTCTTTATATTGAGTGAAAGGTTCATTGACTCC 35
                                               ********  **   *  **** ******  * **

consensus_1811#0      TTGTTGTAGTGTTTCCACTTGTTGGAAAATGGCTTCTAAACTCATTTTTTCTCCAAACAG 240
consensus_1811#1      TTGCTGCAAAGTTTCCACTTGTTGGAAAATGGCTTCTACACTCATTTTTTCTCCAAAAAG 95
                      *** ** *  **************************** ****************** **

consensus_1811#0      CTTAATAAGGTTTGTTTTTACTTTTACCCACGATTCGTCTAATATGCGATGAAAGAAACC 300
consensus_1811#1      CTTTATTAAATTTAATTTAACATTCGCCCACGTATCATCTAATATGCGACTGAAAAATCC 155
                      *** ** *  ***  *** ** **  ******  ** ************   ** ** **

consensus_1811#0      AGCTGCACTACCTTTTAATTTAAACATTACGGTTCGAATTAAATCTTCCTCCGATTCACC 360
consensus_1811#1      AGCAGCATTTCCTTTTAATTTGAACATTACCGTTCTAATTAAATCCTCTTCCGATTCGCC 215
                      *** *** * *********** ******** **** ********* ** ******** **

consensus_1811#0      CGCTGGTATTTGTTTAGCAAAGAATTCAACTTGATAAAGAAATCCATCTAAATCATTTGC 420
consensus_1811#1      TCTTGGTATCTGATTCGCAAAATATTCTACTTGAAATAAAAATCCATCTAATTCCTTTGC 275
                         ****** ** ** *****  **** ****** * * ************ ** *****

consensus_1811#0      ATTTCCGTTGTATTCCGGAATACATAACATTGCCCTTTCGAGTGGAAATTCATATGCCAT 480
consensus_1811#1      AGCTCCGTGATATTCAGGAATGCATAGCATTGCCTTTTCCGTTGGGAATTCGTAAGCCAT 335
                      *  *****  ***** ***** **** ******* ****   *** ***** ** *****

consensus_1811#0      TTTGTGGATTGTAGTGTTTAATGCACGCTCGATTTCAATACTCTGGTTGAAAAAGTCTTC 540
consensus_1811#1      TTTTGAAAATGACGCGTTCAACGCTCTATCGATTTCAAGGCTTTGATTTAATAATTCTCC 395
                      ***    * **  * *** ** ** *  **********  ** ** ** ** ** *** *

consensus_1811#0      CTTAAGAATTCTGAGGTGTTCCGTATAATTATATTCTTTGTGTAGACACTGATC 594
consensus_1811#1      TTTGAGAACTTGGAGGCGTTTTTGGTAA-------------------------- 423
                       ** **** *  **** ***     ***