cluster # 182

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Anopheles gambiae
cluster # 182 cluster # 182 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_182#0 length = 701 sequences # 1

consensus_182#1 length = 551 sequences # 1

consensusID : consensus_182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [GAATTGCCCCGAGGTTANGCGGGTGGCAAGGGCACAGAAGCCGGTCATTGCGGNTGGTGAACGGGTACGCACTGGGCGGTGGCTGCGAGCTGGCGATGATAGTGCGATATCATCTACGCGGGCGATAAGGCACGGTTTGGGCAGCCGGAAATTTGCGCTCGGAACGATCCCCGGGGCGGGCGGTTCGCAGCGTACTGACCCGCGCGATGGGCAAATCGAAGGCGATGGAGATGTGCCTGACAGGGAACATGATCCACGGCGAGGAAGCGGAACGATCGGGGCTAGTGAGCAAGGTATTCCCGGCCGAAAAGCTGGTCGACGGAGGCGGTCAAGCTTGGGCGAGAAGCATTTCCACCTTCTCGCCGCTNGATCGTGCGGCTGTGCAAGGCAGGCAGTCAACGCGTCGTACGCAGATTGTCGCNTACAACGCAGCGGGCTGCGCTCTCCAGCGGCGCCACTTCCACGCGAACCTTCTCGGACCAAGCATCGGCTGGCACCGGTANTTGCACGGCCGNTAACGGCATGNNNCAACGCCGTTGCCAGGCCCAAAAACANTTTCCTCNCAAAACCNACACTAACAANCAACCGACNGACAACNAACAGGAAACATCCACAGCTCATAACAACTTCCCCTATTTCCTNCCCCCATAANTGCACCGANCNCAACATTGGTGCCAAGACATACACCCAATATCATATCC]

[+] EMBL AL695392             [GAATTGCCCCGAGGTTANGCGGGTGGCAAGGGCACAGAAGCCGGTCATTGCGGNTGGTGAACGGGTACGCACTGGGCGGTGGCTGCGAGCTGGCGATGATAGTGCGATATCATCTACGCGGGCGATAAGGCACGGTTTGGGCAGCCGGAAATTTGCGCTCGGAACGATCCCCGGGGCGGGCGGTTCGCAGCGTACTGACCCGCGCGATGGGCAAATCGAAGGCGATGGAGATGTGCCTGACAGGGAACATGATCCACGGCGAGGAAGCGGAACGATCGGGGCTAGTGAGCAAGGTATTCCCGGCCGAAAAGCTGGTCGACGGAGGCGGTCAAGCTTGGGCGAGAAGCATTTCCACCTTCTCGCCGCTNGATCGTGCGGCTGTGCAAGGCAGGCAGTCAACGCGTCGTACGCAGATTGTCGCNTACAACGCAGCGGGCTGCGCTCTCCAGCGGCGCCACTTCCACGCGAACCTTCTCGGACCAAGCATCGGCTGGCACCGGTANTTGCACGGCCGNTAACGGCATGNNNCAACGCCGTTGCCAGGCCCAAAAACANTTTCCTCNCAAAACCNACACTAACAANCAACCGACNGACAACNAACAGGAAACATCCACAGCTCATAACAACTTCCCCTATTTCCTNCCCCCATAANTGCACCGANCNCAACATTGGTGCCAAGACATACACCCAATATCATATCC]




>consensus_182#0
GAATTGCCCCGAGGTTANGCGGGTGGCAAGGGCACAGAAGCCGGTCATTGCGGNTGGTGA
ACGGGTACGCACTGGGCGGTGGCTGCGAGCTGGCGATGATAGTGCGATATCATCTACGCG
GGCGATAAGGCACGGTTTGGGCAGCCGGAAATTTGCGCTCGGAACGATCCCCGGGGCGGG
CGGTTCGCAGCGTACTGACCCGCGCGATGGGCAAATCGAAGGCGATGGAGATGTGCCTGA
CAGGGAACATGATCCACGGCGAGGAAGCGGAACGATCGGGGCTAGTGAGCAAGGTATTCC
CGGCCGAAAAGCTGGTCGACGGAGGCGGTCAAGCTTGGGCGAGAAGCATTTCCACCTTCT
CGCCGCTNGATCGTGCGGCTGTGCAAGGCAGGCAGTCAACGCGTCGTACGCAGATTGTCG
CNTACAACGCAGCGGGCTGCGCTCTCCAGCGGCGCCACTTCCACGCGAACCTTCTCGGAC
CAAGCATCGGCTGGCACCGGTANTTGCACGGCCGNTAACGGCATGNNNCAACGCCGTTGC
CAGGCCCAAAAACANTTTCCTCNCAAAACCNACACTAACAANCAACCGACNGACAACNAA
CAGGAAACATCCACAGCTCATAACAACTTCCCCTATTTCCTNCCCCCATAANTGCACCGA
NCNCAACATTGGTGCCAAGACATACACCCAATATCATATCC

consensusID : consensus_182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [TCACGTACACGTCGCCCAGCTTGGCCAAGCTTTCTCGTTTTTTTTTTTTTTTTTTTTGTCGGCCTTAACCTTATTGCCGCGCGCATCGACACCCTTGCCTTCCTCCTCCACGTAGAAGCGGACGTTTTCCAGCAGGATGACCGAGCCCGGGGCCGGATCCTTGCAGGCCGCCTCCACCTCCGCCCCGACGCAATCATTCAGGAAGGTTACATCACGCCCGAGCAGCTTCTTCAGCTCGTCCGCTACCGGGGCAAGCGTGTACTTGGCGTTTTTGTTACCGTCCGGACGGCCCAGATGGGACGCCAGCACCACCGACTTGGCTCCCTTCTCGAGCGCAAACTTGATGCTGTTGAGCGCGGCCACAATGCGCTGATTGCTGGTAATTTTGCCCTCCTTGATGGGGACATTGAAATCGACACGCATAAACACCCGCTTGCCCTTCAGATCAACGTTTTCGATGCTAAGCTTGTTGAGAGCCATTATCACAGTCGACAGTTATGCACGGGATAGCTTGCTGATGGTGGAATGGGAACAGATGTTCACCGCAATTT]

[+] EMBL CNS09P9M             [TCACGTACACGTCGCCCAGCTTGGCCAAGCTTTCTCGTTTTTTTTTTTTTTTTTTTTGTCGGCCTTAACCTTATTGCCGCGCGCATCGACACCCTTGCCTTCCTCCTCCACGTAGAAGCGGACGTTTTCCAGCAGGATGACCGAGCCCGGGGCCGGATCCTTGCAGGCCGCCTCCACCTCCGCCCCGACGCAATCATTCAGGAAGGTTACATCACGCCCGAGCAGCTTCTTCAGCTCGTCCGCTACCGGGGCAAGCGTGTACTTGGCGTTTTTGTTACCGTCCGGACGGCCCAGATGGGACGCCAGCACCACCGACTTGGCTCCCTTCTCGAGCGCAAACTTGATGCTGTTGAGCGCGGCCACAATGCGCTGATTGCTGGTAATTTTGCCCTCCTTGATGGGGACATTGAAATCGACACGCATAAACACCCGCTTGCCCTTCAGATCAACGTTTTCGATGCTAAGCTTGTTGAGAGCCATTATCACAGTCGACAGTTATGCACGGGATAGCTTGCTGATGGTGGAATGGGAACAGATGTTCACCGCAATTT]




>consensus_182#1
TCACGTACACGTCGCCCAGCTTGGCCAAGCTTTCTCGTTTTTTTTTTTTTTTTTTTTGTC
GGCCTTAACCTTATTGCCGCGCGCATCGACACCCTTGCCTTCCTCCTCCACGTAGAAGCG
GACGTTTTCCAGCAGGATGACCGAGCCCGGGGCCGGATCCTTGCAGGCCGCCTCCACCTC
CGCCCCGACGCAATCATTCAGGAAGGTTACATCACGCCCGAGCAGCTTCTTCAGCTCGTC
CGCTACCGGGGCAAGCGTGTACTTGGCGTTTTTGTTACCGTCCGGACGGCCCAGATGGGA
CGCCAGCACCACCGACTTGGCTCCCTTCTCGAGCGCAAACTTGATGCTGTTGAGCGCGGC
CACAATGCGCTGATTGCTGGTAATTTTGCCCTCCTTGATGGGGACATTGAAATCGACACG
CATAAACACCCGCTTGCCCTTCAGATCAACGTTTTCGATGCTAAGCTTGTTGAGAGCCAT
TATCACAGTCGACAGTTATGCACGGGATAGCTTGCTGATGGTGGAATGGGAACAGATGTT
CACCGCAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_182#0      GAATTGCCCCGAGGTTANGCGGGTGGCAAGGGCACAGAAGCCGGTCATTGCGGNTGGTGA 60
consensus_182#1      ------------------------------------------------------------
                                                                                 

consensus_182#0      ACGGGTACGCACTGGGCGGTGGCTGCGAGCTGGCGATGATAGTGCGATATCATCTACGCG 120
consensus_182#1      -----------------------------------------------------TCACGTA 7
                                                                            ***  

consensus_182#0      GGCGATAAGGCACGGTTTGGGCAGCCGGAAATTTGCGCTCGGAACGATCCCCGGGGCGGG 180
consensus_182#1      CACGTC---GCCCAGCTTGGCCAAGC-----TTTCTCGTTTTTTTTTTTTTTTTTTTTGT 59
                       **     ** * * **** **  *     ***    *        *          * 

consensus_182#0      CGGTTCGCAGCGTACTGACCCGCGCGATGGGCAAATCGAAGGCGATGGAGATGTGCCTGA 240
consensus_182#1      CGGCCTTAACCTTATTGCCGCGCGC-ATCGACACCCTT---GCCTTCCTCCTCCACGTAG 115
                     ***     * * ** ** * ***** ** * **        **  *     *   * *  

consensus_182#0      CAGGGAACATGATCCACGGCGAGGA---AGCGGAACGATCGGGGCTAGTGAGCAAGGTAT 297
consensus_182#1      AAGCGGACGTTTTCCAGCAGGATGACCGAGCCCGGGGCCGGATCCTTGCAGGCCGCCTCC 175
                      ** * ** *  ****    ** **   ***     *   *   ** *   **    *  

consensus_182#0      TCC-CGGCCGAAAAGCTGGTCGACGGAGGCGGTCA-AGCTTGGGCGAGAAGCATTTCCAC 355
consensus_182#1      ACCTCCGCCCCGACGC-AATCATTCAGGAAGGTTACATCACGCCCGAGCAGCTTCTTCAG 234
                      ** * ***   * **   **      *  *** * * *  *  **** *** * * ** 

consensus_182#0      CTTCTC-GCCGCTNGATCGTGCGGCTGTGCAAGGCAGGCAGTCAACGCGTCGTACG---C 411
consensus_182#1      CTCGTCCGCTACCGGGGCAAGCG--TGTACTTGGCGTTTTTGTTACCGTCCGGACGGCCC 292
                     **  ** **  *  *  *  ***  *** *  ***         **    ** ***   *

consensus_182#0      AGATTGTCGCNTACAACGCAGCGGGCT--GCGCTCTCCAGCGGCGCCACTTCCACGCGAA 469
consensus_182#1      AGATGG--GACGCCAGCACCACCGACTTGGCTCCCTTCTCGAGCGCAAACTTGATGCTGT 350
                     **** *  *    ** * *  * * **  ** * ** *    **** *  *  * **   

consensus_182#0      CCTTCTCGG--ACCAAGCATCGGCTGGCACCGGTANTTGCACGGCCGNTAACGGCATGNN 527
consensus_182#1      TGAGCGCGGCCACAATGCGCTGATTG---CTGGTAATTTTGCCCTCCTTGATGG----GG 403
                         * ***  ** * **   *  **   * **** **   *   *  * * **      

consensus_182#0      NCAACGCCGTTGCCAGGCCCAAAAACAN-TTTCCTCNCAAAACCNACACTAACAANCAAC 586
consensus_182#1      ACATTGAAATCGACACGCATAAACACCCGCTTGCCCTTCAGATCAACGTTTTCGAT--GC 461
                      **  *   * * ** **  *** **    ** * *   * * * **  *  * *    *

consensus_182#0      CGACNGACAACNAACAGGAAACATCCACAGCTCATAACAACTTCCCCTATTTCCTNCCCC 646
consensus_182#1      TAAGC--TTGTTGAGAGCCATTATC-ACAGTCGACAGTTATGCACGGGATAGCTTGCT-- 516
                       *          * **  *  *** ****   * *   *    *   **  * * *   

consensus_182#0      CATAANTGCACCGANCNCAACATTGGTGCCAAGACATACACCCAATATCATATCC 701
consensus_182#1      GATGGTGGAATGGGAACAGATGTTCACCGCAATTT-------------------- 551
                      **    * *  *      *  **     ***