cluster # 1830

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Anopheles gambiae
cluster # 1830 cluster # 1830 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1830#0 length = 656 sequences # 1

consensus_1830#1 length = 623 sequences # 1

consensusID : consensus_1830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGCTGTAGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAATATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCGAAGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCCATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAGCAGACAGCATCTCAATGCGTANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGCGACTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG]

[+] EMBL AL694293             [CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGCTGTAGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAATATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCGAAGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCCATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAGCAGACAGCATCTCAATGCGTANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGCGACTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG]




>consensus_1830#0
CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTT
GCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTAC
AAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGAT
ATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGCTGT
AGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAAT
ATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCGA
AGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCC
ATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAGC
AGACAGCATCTCAATGCGTANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGA
ACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGCGA
CTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG

consensusID : consensus_1830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATTCGCGCCCACAAGCTGCTGCTCGCCGCCTGTAGTGCCTACTTCAAGGAGCTGTTCGAGCTAGTTCCTTTGCAGCACAATCACATGATAATATGCTCAAACATTTCGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCGAGGTGAACGTGCCCCAGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCATCTGGGGACTGACATACGACCCGTCGGACCAGCCGGCGGCGACTGCGAGCGTCCAGCAGACATCTCAATGCGTTGCGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCTCCGAATCTTGTTGAGGCTGTACCGCTAATACAAACGCCTTTGGATACTAATATCGCCACGCAAATAACCGAATCGCGTCTATCAACTGTTTCAACTAGC]

[+] EMBL BM600951             [CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTTGCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGATATAACGCTGTTTTGTGAGGGGCGCAAGATTCGCGCCCACAAGCTGCTGCTCGCCGCCTGTAGTGCCTACTTCAAGGAGCTGTTCGAGCTAGTTCCTTTGCAGCACAATCACATGATAATATGCTCAAACATTTCGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCGAGGTGAACGTGCCCCAGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCATCTGGGGACTGACATACGACCCGTCGGACCAGCCGGCGGCGACTGCGAGCGTCCAGCAGACATCTCAATGCGTTGCGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCTCCGAATCTTGTTGAGGCTGTACCGCTAATACAAACGCCTTTGGATACTAATATCGCCACGCAAATAACCGAATCGCGTCTATCAACTGTTTCAACTAGC]




>consensus_1830#1
CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTTGCAGGAAAACTAG
GTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTACAAAGCCTTCGTGA
CGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGATATAACGCTGTTTT
GTGAGGGGCGCAAGATTCGCGCCCACAAGCTGCTGCTCGCCGCCTGTAGTGCCTACTTCA
AGGAGCTGTTCGAGCTAGTTCCTTTGCAGCACAATCACATGATAATATGCTCAAACATTT
CGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCGAGGTGAACGTGCCCC
AGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCCATCTGGGGACTGACAT
ACGACCCGTCGGACCAGCCGGCGGCGACTGCGAGCGTCCAGCAGACATCTCAATGCGTTG
CGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTCGAACCTCCGAATCTTGTTGAGG
CTGTACCGCTAATACAAACGCCTTTGGATACTAATATCGCCACGCAAATAACCGAATCGC
GTCTATCAACTGTTTCAACTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1830#0      CCNGGNTTATTGTCACATACAACACAAAACAAGCACATAGCCGATTGAAGTGTTTTTTTT 60
consensus_1830#1      -------------CCGATCCAAAACAACACAAGCACAAAGCCGATAAAAAGTTATTTTTT 47
                                   *  ** *** **** ********* *******  **   * ******

consensus_1830#0      GCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTAC 120
consensus_1830#1      GCAGGAAAACTAGGTAGGATGAGCCCGCAACCGTCTCTGCATTTGCGATGGAACAATTAC 107
                      ************************************************************

consensus_1830#0      AAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCGTCAACAAGATAACAAGATGCTGGAT 180
consensus_1830#1      AAAGCCTTCGTGACGGGAGCACTCGATTCGTTTCATCAACAAGATAACAAGATGCTGGAT 167
                      ********************************** *************************

consensus_1830#0      ATAACGCTGTTTTGTGAGGGGCGCAAGATNTCGCGCCCACAAGCCGCTGCTCGCCGC-TG 239
consensus_1830#1      ATAACGCTGTTTTGTGAGGGGCGCAAGATT-CGCGCCCACAAGCTGCTGCTCGCCGCCTG 226
                      *****************************  ************* ************ **

consensus_1830#0      TAGTGCCTACTTCAAGGAGCTGTTCGATGCAAGTTCCTTTACAGCACAATCACATGATAA 299
consensus_1830#1      TAGTGCCTACTTCAAGGAGCTGTTCGA-GCTAGTTCCTTTGCAGCACAATCACATGATAA 285
                      *************************** ** ********* *******************

consensus_1830#0      TATGCTCAAACATTTCGCACGANGTCATGATGTCGCTGGTACAGTTTATGTACTTGGGCG 359
consensus_1830#1      TATGCTCAAACATTTCGCACGATGTCATGATGTCGCTGGTACAGTTTATGTACCTGGGCG 345
                      ********************** ****************************** ******

consensus_1830#0      AAGTCGANAGTGNCCCANGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCC 419
consensus_1830#1      AGGT-GAACGTGCCCCAGGAGCATCTTGCAGAGTTTTTCCGTACCGCCGATAAGCTGTCC 404
                      * ** **  *** **** ******************************************

consensus_1830#0      CATCTGGGGACTGAGCATACGACCCGTCGGACCAAACCGGCGGCGACTGCGAGCATCCAG 479
consensus_1830#1      -ATCTGGGGACTGA-CATACGACCCGTCGGACCAG-CCGGCGGCGACTGCGAGCGTCCAG 461
                       ************* *******************  ****************** *****

consensus_1830#0      CAGACAGCATCTCAATGCGT-ANGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTC 538
consensus_1830#1      CAGA---CATCTCAATGCGTTGCGGTGCAGGATCAAGCTAACACCACAACAAACAAGGTC 518
                      ****   *************   *************************************

consensus_1830#0      GAACCATCCGAATCTTGGTTGAAGGGTGTNATCGCGTAAATACAAAACGCCTATCTGGGC 598
consensus_1830#1      GAACC-TCCGAATCTTG--TTGAGGCTGTA---CCGCTAATACAAA-CGCCT---TTGGA 568
                      ***** ***********  *  *** ***     **  ******** *****   * ** 

consensus_1830#0      GACTAAATAACGGGCACGCACACTAACCGAATCGGCGTCTATCAACGATTCACACTAG- 656
consensus_1830#1      TACTAA--TATCGCCACGCAAA-TAACCGAATCG-CGTCTATCAACTGTTTCAACTAGC 623
                       *****   *  * ****** * *********** ***********  **   *****