These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCATTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACTAAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAGTGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCGATGCCATCCGTACGGTGGGGCAGGAGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG] [+] EMBL BX620292 [TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCATTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACTAAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAGTGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCGATGCCATCCGTACGGTGGGGCAGGAGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG] consensusID : consensus_1836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CTCGAGCAGATCGGCCACGAGGCTGAACCCCCTCGAAACCGGCAGGACGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCATCCGCACGGTGGGGCAGGAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTACGGCAAGGTGGCGGAGACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTCACCGTACGCAGTGTGCCAAGATGTACGGGTACTGG] [+] EMBL BX469395 [CTCGAGCAGATCGGCCACGAGGCTGAACCCCCTCGAAACCGGCAGGACGGTTCATATTTGGCGGAATTTCTGCTGGACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACGTTCAACACGTCGCGCATCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACGGCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAATATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGGCGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCATCCGCACGGTGGGGCAGGAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTACGGCAAGGTGGCGGAGACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTCACCGTACGCAGTGTGCCAAGATGTACGGGTACTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1836#0 TTGCAAATTGCTGGCAAATTCCATTTCGCACCCATACCCACACGCCATTACGCAGAAGCA 60 consensus_1836#1 ------------------------------------------------------------ consensus_1836#0 TTTTTATTGCCGNAGAAGCGCTAATAACATACAAACACTGTCGGGTGATTTTATCGTACT 120 consensus_1836#1 ------------------------------------------------------------ consensus_1836#0 AAATTAGTCCACTAAGCATGGAGGGCGAAGCAGCAGTGACGAATCCGGTCGATAGGAAAG 180 consensus_1836#1 ------------------------------------------CTCGAGCAGATCGGCCA- 17 ** * *** ** * consensus_1836#0 TGGCACTGATAACAGGCATTACGGGTCAAGATGGTTCATATTTGGCGGAATTTCTGCTGG 240 consensus_1836#1 CGAGGCTGAACCCCCTCGAAACCGG-CAGGACGGTTCATATTTGGCGGAATTTCTGCTGG 76 * **** * * ** ** ** ** **************************** consensus_1836#0 ACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGCACGTTCAACACGTCGCGCA 300 consensus_1836#1 ACAAGGGCTACGAGGTGCACGGCATAATAAGGCGCGCGAGTACGTTCAACACGTCGCGCA 136 **************************************** ******************* consensus_1836#0 TCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACG 360 consensus_1836#1 TCGAGCATCTGTATGCGGATCCGCGCACGCACCGGGAGGGCAAGATGAAGCTGCACTACG 196 ************************************************************ consensus_1836#0 GCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAA 420 consensus_1836#1 GCGACATGACCGACAGCAGCGCGCTGGTGAAAATCATTGCCCAGGTGCGCCCGTCCGAAA 256 ************************************************************ consensus_1836#0 TATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGG 480 consensus_1836#1 TATACAATCTGGCCGCCCAGAGCCACGTGAAGATTTCGTTCGATCTGAGCGAGTACACGG 316 ************************************************************ consensus_1836#0 CGGAGGTGGATGCGGTCGGTACGCTCCGGCTGCTCG-ATGCCATCCGTACGGTGGGGCAG 539 consensus_1836#1 CGGAGGTGGATGCGGTCGGTACGCTGCGGCTGCTCGGATGCCATCCGCACGGTGGGGCAG 376 ************************* ********** ********** ************ consensus_1836#0 GAGCGGACGGTCCGCTTCTACCAGGCATCGACGTCCGAGCTGTACGGCAAG--------- 590 consensus_1836#1 GAGCGGACGGTCCGCTTCTATCAGGCATCGACGTCCGAGCTGTACGGCAAGGTGGCGGAG 436 ******************** ****************************** consensus_1836#0 ------------------------------------------------------------ consensus_1836#1 ACGCCCCAGAAGCGAAAAGACGCCCGNNTCTATCACCNCGNGTCACCGTACGCAGTGTGC 496 consensus_1836#0 ------------------- consensus_1836#1 CAAGATGTACGGGTACTGG 515 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||