These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAGCGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGTGTTTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGAAGTGCAATGAAGAATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTGAAAAACTTTCCGGACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAATGCGCTCTTGCACTTCATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATTAAAATAACTTTTATGCTTATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTTTTCTATCCCAGTGTATGTGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAGTTTCAACAGGGGGCTATGAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATAGTTATGATGCTCTGGTTG] [+] EMBL AL694339 [GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAGCGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGTGTTTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGAAGTGCAATGAAGAATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTGAAAAACTTTCCGGACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAATGCGCTCTTGCACTTCATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATTAAAATAACTTTTATGCTTATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTTTTCTATCCCAGTGTATGTGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAGTTTCAACAGGGGGCTATGAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATAGTTATGATGCTCTGGTTG] consensusID : consensus_1837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [AGATGAACAAAAAGCAAAAGGACGCGAAAATTGGGGCAAACACATTTTAAATTCACCCTCCAACTCGCCATTTCTTTACGGGCGACAAATTTACTGGCTCGCCCCAGTAACTCCGCAGGAAAATGCATTTCATCTGCACGAATAACACCTCCAGCCCGGAGGTTGAGCACGCCGCTTCACGCCACAATAATTTCATTTCACTTATTAAATCAACCCAATTTTGCGCGTTCCTTCTGTCGCTGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATGAAAAACAACGTCCCATAGCGAAATAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACCCGAAAAGTGCGCACATAATCGAATGCAACGTGCATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGTGCGCCCGTTCCCCCCTTCGGAACGTTGTGTCGCAGAGCGCGATCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTCATC] [+] EMBL BM590869 [AGATGAACAAAAAGCAAAAGGACGCGAAAATTGGGGCAAACACATTTTAAATTCACCCTCCAACTCGCCATTTCTTTACGGGCGACAAATTTACTGGCTCGCCCCAGTAACTCCGCAGGAAAATGCATTTCATCTGCACGAATAACACCTCCAGCCCGGAGGTTGAGCACGCCGCTTCACGCCACAATAATTTCATTTCACTTATTAAATCAACCCAATTTTGCGCGTTCCTTCTGTCGCTGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATGAAAAACAACGTCCCATAGCGAAATAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACCCGAAAAGTGCGCACATAATCGAATGCAACGTGCATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGTGCGCCCGTTCCCCCCTTCGGAACGTTGTGTCGCAGAGCGCGATCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1837#0 GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGT 60 consensus_1837#1 -------------------AGATGAACAAAAAGCAAAAGGA-CGCGAAAATTGGGGCAAA 40 *** ** * * * * * ** * * * consensus_1837#0 TATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAG 120 consensus_1837#1 CACATTTTAAATTCACC-CTCCAACTCGC-CATTTCTTTACGGG-CGACAAATTTACTGG 97 * ******* ** * * * * ** * *** *** ** * * consensus_1837#0 CGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTC---CGAAAG-----TTTAAATT 172 consensus_1837#1 CTCGCCCCAGTAACTCCGCAGGAAAATGCATTTCATCTGCACGAATAACACCTCCAGCCC 157 * ** *** * * *** * * * * **** * * consensus_1837#0 AAAATTTCCGTGT----TTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGA 228 consensus_1837#1 GGAGGTTGAGCACGCCGCTTCACGCCACAATAATTTCATTTCACTTATTAAATCAACCCA 217 * ** * ** * * ** * **** * * * * * consensus_1837#0 AGTGCA-ATGAAGAATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTG 287 consensus_1837#1 ATTTTGCGCGTTCCTTCTGTCGCTGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATG 277 * * * *** * * ** * * * ** * ** * ** consensus_1837#0 AAAAACT---TTCCGGACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAA 344 consensus_1837#1 AAAAACAACGTCCCATAGCGAAATAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACC 337 ****** * ** * * * * ** *** * * * * consensus_1837#0 TGCGCTCT-TGCACTTCATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATT 403 consensus_1837#1 CGAAAAGTGCGCACATAATCGAATGCAACGTGCATTATGTGCA---TCGGGGAGGGCA-- 392 * * **** * **** * * * ** * ** **** ****** consensus_1837#0 AAAATAACTTTTATGCTTATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTT 463 consensus_1837#1 ---AAGGCGTTATTGTTTAA-ATACAACGCGTGCGCCCGTTCCCCCCTTCGGAACG---- 444 * * ** ** *** ** * ** * ** ** * * *** consensus_1837#0 TTCTATCCCAGTGTATGTGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAG 523 consensus_1837#1 TTGTGTCGCAGAGCGCGATCGT--TTCACCTTCAGTGTCACGTGGCGCGTT--CCGAAAG 500 ** * ** *** * * * *** ** * * * * **** consensus_1837#0 TTTCAACAGGGGGCTATGAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATA 583 consensus_1837#1 TTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTCATC----------------- 543 *** ** * ** *** * **** * * *** consensus_1837#0 GTTATGATGCTCTGGTTG 601 consensus_1837#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||