cluster # 184

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Anopheles gambiae
cluster # 184 cluster # 184 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_184#0 length = 686 sequences # 1

consensus_184#1 length = 551 sequences # 1

consensusID : consensus_184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGACTTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGAGCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGATATTGCTAAAGGAATAGGAAGCGTCTAGAGCGAGAGAGAGAGAGCGAGCGAGTTTTAGTTGGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGAGAAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCACCGGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAAGGAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCGGAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCCAAGTACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATCACCGGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTCGAGGCCGGCATCTCCAAGAACGGCCAGAC]

[+] EMBL BM637788             [CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGACTTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGAGCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGATATTGCTAAAGGAATAGGAAGCGTCTAGAGCGAGAGAGAGAGAGCGAGCGAGTTTTAGTTGGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGAGAAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCACCGGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAAGGAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCGGAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCCAAGTACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATCACCGGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTCGAGGCCGGCATCTCCAAGAACGGCCAGAC]




>consensus_184#0
CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGAC
TTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGA
GCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGA
TATTGCTAAAGGAATAGGAAGCGTCTAGAGCGAGAGAGAGAGAGCGAGCGAGTTTTAGTT
GGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGAG
AAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCACC
GGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAAG
GAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAG
GCGGAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCCAAG
TACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATCACC
GGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTCGAG
GCCGGCATCTCCAAGAACGGCCAGAC

consensusID : consensus_184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [GAGGTAAGACAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATTTCTAGTAAGTGCTAGTCATTAGCTAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCATGAGTTCCCTCA]

[+] EMBL CNS09BRA             [GAGGTAAGACAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATTTCTAGTAAGTGCTAGTCATTAGCTAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCATGAGTTCCCTCA]




>consensus_184#1
GAGGTAAGACAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCT
TAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAA
CTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCC
TCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGAT
GAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTAC
AATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAAT
CACCCAAATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATT
TCTAGTAAGTGCTAGTCATTAGCTAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGC
CCGTCGCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCAT
GAGTTCCCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_184#0      CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGAC 60
consensus_184#1      -------------GAGGTAAGACAGATTGATAGCTCTTTCT--------------CAAAC 33
                                  * * *    *** **  *   * **  *              ** **

consensus_184#0      TTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGA 120
consensus_184#1      TTAAGGGTAGTGG----TGCATGGCCGTTCTTAGTT-CGTGGAATGATTTGTCTGGTTAA 88
                     ** ** *  *  *    **  *  * ** * ** ** **   ***  *  *  **    *

consensus_184#0      GCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGA 180
consensus_184#1      ----------TTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAG 138
                               * **       *** ** *     ****  *   ** *       *    

consensus_184#0      TATTGCTAAAGGAATAGGAAGCGTCTAGAGCGA-GAGAGAGAGAGCGAGCGAGTTTTAGT 239
consensus_184#1      TGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACT 198
                     * *  **   **   *     ***   *** *  * * *      ** * *    * * *

consensus_184#0      TGGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGA 299
consensus_184#1      TAG--TTTGCCCTGC-TTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAA 255
                     * *  ****   **    *** * *  *       * * *      *** ** *  *  *

consensus_184#0      GAAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCAC 359
consensus_184#1      CAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCA-CGCGTGCTACAATGTGAGCAGCAG 314
                      * * *    **   * * *  **  * **   *  **  * *  ***   ** ** ** 

consensus_184#0      CGGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAA 419
consensus_184#1      CGTGT-TCTCGCCTTATGGCGCCCCCATTCCGAGAGG------AACGGGAAATCACCCAA 367
                     **    ***   **    * **  *  *  *** * *      * ** *** *     **

consensus_184#0      GGAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAA 479
consensus_184#1      ATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATTTCTAGTA 427
                          *       * **    ***   *     ** * * **      * *      * *

consensus_184#0      GGCG--GAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCC 537
consensus_184#1      AGTGCTAGTCATTAGC-TAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC- 485
                      * *     * * *** * *         **     ** ** ** *    *    **** 

consensus_184#0      AAGTACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATC 597
consensus_184#1      -GCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCATGAGT 544
                        ******     ******     *   * *       **    * **  * *****  

consensus_184#0      ACCGGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTC 657
consensus_184#1      TCCCTCA----------------------------------------------------- 551
                      **  **                                                     

consensus_184#0      GAGGCCGGCATCTCCAAGAACGGCCAGAC 686
consensus_184#1      -----------------------------