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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GGCAGAATCCCGAGGTTTAATTAATATTTATATAAACACCTGTGTACACGAANCCTGTGTGACGAAAACGTAACGGTAACGAAAGACAAGACATAAACCCAAGTAAAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTATTGTGAGAAAAGGGCACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACAACAGTAGTAACAGTGGGGAAATGTAAAGCAAAAATGCCAAGTNTGGCGGGCGAGNGAGAGCTAAAGTGGCGATAAGGGGTGTGAGGCGTTCTCCTTCACCACTCCTCCAACTCCCGCGATTGGCCGGTACAGTGATCTTNTGATCGCGAAGGTTCGTCTCTCGTGTCCAAATAATACCGTACAGTGGCGATGAGNGCNAGAGCGGTAGAATGCATGATCAGTCATTCAGGTAACATATTCATACAAGGCGCGAAACCATTTTGACAAGCGAAACACCACACAGACCAAACGCAAAACCAACTTCCCTCAATTCGTCACNGGGGTGGCCACTANCTGCCTCTTGTAACCTTTACCCCCAGAGGGAATTGTGGCTATTCANATGGTCGACAAAACACCTCAAATAGCAAGACACGTAGTTGAGGAACATTCAACTACAT]
[+] EMBL AL694451 [GGCAGAATCCCGAGGTTTAATTAATATTTATATAAACACCTGTGTACACGAANCCTGTGTGACGAAAACGTAACGGTAACGAAAGACAAGACATAAACCCAAGTAAAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTATTGTGAGAAAAGGGCACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACAACAGTAGTAACAGTGGGGAAATGTAAAGCAAAAATGCCAAGTNTGGCGGGCGAGNGAGAGCTAAAGTGGCGATAAGGGGTGTGAGGCGTTCTCCTTCACCACTCCTCCAACTCCCGCGATTGGCCGGTACAGTGATCTTNTGATCGCGAAGGTTCGTCTCTCGTGTCCAAATAATACCGTACAGTGGCGATGAGNGCNAGAGCGGTAGAATGCATGATCAGTCATTCAGGTAACATATTCATACAAGGCGCGAAACCATTTTGACAAGCGAAACACCACACAGACCAAACGCAAAACCAACTTCCCTCAATTCGTCACNGGGGTGGCCACTANCTGCCTCTTGTAACCTTTACCCCCAGAGGGAATTGTGGCTATTCANATGGTCGACAAAACACCTCAAATAGCAAGACACGTAGTTGAGGAACATTCAACTACAT]
consensusID : consensus_1864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[TTGAAAAAAAAAGAACGTGCGTGTACCAATGTAAATGTTACGTTGAATGATGTCGTGCCGAGCGCCGATTCAACGTACATGGAAAGCATTAATTTGTAAGTAGGTAATTGGTTTTTCGCCCTCGGTTTAATGTATGTTCTGCTTTTATTTTAATTTCAAACGTAACTTAAATTAATATTTATATAAACGCCTGTGTACACGAACCCTGTGTGACGAAAACGTAACGGTAACGTAAGACGAGACATAAACCCAAGTAGAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTGTGCGAGAAAAGGGACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACTACAGTAGTAACAGTGGGGAATGTAAGC]
[+] EMBL BM580191 [TTGAAAAAAAAAGAACGTGCGTGTACCAATGTAAATGTTACGTTGAATGATGTCGTGCCGAGCGCCGATTCAACGTACATGGAAAGCATTAATTTGTAAGTAGGTAATTGGTTTTTCGCCCTCGGTTTAATGTATGTTCTGCTTTTATTTTAATTTCAAACGTAACTTAAATTAATATTTATATAAACGCCTGTGTACACGAACCCTGTGTGACGAAAACGTAACGGTAACGTAAGACGAGACATAAACCCAAGTAGAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATCAAGAGAGAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTGTGCGAGAAAAGGGACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACTACAGTAGTAACAGTGGGGAATGTAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1864#0 ------------------------------------------------------------
consensus_1864#1 TTGAAAAAAAAAGAACGTGCGTGTACCAATGTAAATGTTACGTTGAATGATGTCGTGCCG 60
consensus_1864#0 ------------------------------------------------------------
consensus_1864#1 AGCGCCGATTCAACGTACATGGAAAGCATTAATTTGTAAGTAGGTAATTGGTTTTTCGCC 120
consensus_1864#0 -------------------------------GGCAGAATCCCGAGGTTTAATTAATATTT 29
consensus_1864#1 CTCGGTTTAATGTATGTTCTGCTTTTATTTTAATTTCAAACGTAACTTAAATTAATATTT 180
* * * ** ***********
consensus_1864#0 ATATAAACACCTGTGTACACGAANCCTGTGTGACGAAAACGTAACGGTAACGAAAGACAA 89
consensus_1864#1 ATATAAACGCCTGTGTACACGAACCCTGTGTGACGAAAACGTAACGGTAACGTAAGACGA 240
******** ************** **************************** ***** *
consensus_1864#0 GACATAAACCCAAGTAAAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATC 149
consensus_1864#1 GACATAAACCCAAGTAGAACAATGCTCAGATATGAAACACAAGAAAACAAACTTAGTATC 300
**************** *******************************************
consensus_1864#0 AAGAGAGAGAGAGAGA------AAGCGTATGTGTGTGCGCGTGTGTATTGTGAGAAAAGG 203
consensus_1864#1 AAGAGAGAGAGAGAGAGAGAGAAAGCGTATGTGTGTGCGCGTGTGTGT-GCGAGAAAAGG 359
**************** ************************ * * *********
consensus_1864#0 GCACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACAACAGTAGTAAC 263
consensus_1864#1 G-ACGGGTTAATATCAATAATAACGCAACGAGGATCAATTTCGAACACTACAGTAGTAAC 418
* ********************************************** ***********
consensus_1864#0 AGTGGGGAAATGTAAAGCAAAAATGCCAAGTNTGGCGGGCGAGNGAGAGCTAAAGTGGCG 323
consensus_1864#1 AGTGGGGAA-TGTAAGC------------------------------------------- 434
********* *****
consensus_1864#0 ATAAGGGGTGTGAGGCGTTCTCCTTCACCACTCCTCCAACTCCCGCGATTGGCCGGTACA 383
consensus_1864#1 ------------------------------------------------------------
consensus_1864#0 GTGATCTTNTGATCGCGAAGGTTCGTCTCTCGTGTCCAAATAATACCGTACAGTGGCGAT 443
consensus_1864#1 ------------------------------------------------------------
consensus_1864#0 GAGNGCNAGAGCGGTAGAATGCATGATCAGTCATTCAGGTAACATATTCATACAAGGCGC 503
consensus_1864#1 ------------------------------------------------------------
consensus_1864#0 GAAACCATTTTGACAAGCGAAACACCACACAGACCAAACGCAAAACCAACTTCCCTCAAT 563
consensus_1864#1 ------------------------------------------------------------
consensus_1864#0 TCGTCACNGGGGTGGCCACTANCTGCCTCTTGTAACCTTTACCCCCAGAGGGAATTGTGG 623
consensus_1864#1 ------------------------------------------------------------
consensus_1864#0 CTATTCANATGGTCGACAAAACACCTCAAATAGCAAGACACGTAGTTGAGGAACATTCAA 683
consensus_1864#1 ------------------------------------------------------------
consensus_1864#0 CTACAT 689
consensus_1864#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||