cluster # 1878

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Anopheles gambiae
cluster # 1878 cluster # 1878 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1878#0 length = 771 sequences # 1

consensus_1878#1 length = 508 sequences # 1

consensusID : consensus_1878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 771
fasta sequence

                              [TATGTATACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCTCCAGTTAAAGAGATTTGCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCGTGGTGTTGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATGGTCGTTTCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATTATAAGTGTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGATTTCACGGTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTTCAAAATTTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCATTCCCTTAAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACTGGTAATAACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA]

[+] EMBL BX627080             [TATGTATACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCTCCAGTTAAAGAGATTTGCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCGTGGTGTTGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATGGTCGTTTCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATTATAAGTGTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGATTTCACGGTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTTCAAAATTTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCATTCCCTTAAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACTGGTAATAACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA]




>consensus_1878#0
TATGTATACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTG
TTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGT
TCACGATGAAAGATTTACTTACCTCCAGTTAAAGAGATTTGCTTCCCCGAGTGGAATTGT
ACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAA
TTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTT
TTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCGTGGTGT
TGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATGGTCGTT
TCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATTATAAGT
GTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGATTTCACG
GTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTTCAAAAT
TTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCATTCCCTT
AAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACTGGTAAT
AACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA

consensusID : consensus_1878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTAACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTGAGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTATACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCCATGAG]

[+] EMBL BM576333             [CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTAACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTGAGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTATACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTTTTTACAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAAAGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGGAATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGTTTTTAAAAATGGAGAAGAAATCCATGAG]




>consensus_1878#1
CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTA
ACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTG
AGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTA
TACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTTTTTACAAC
ATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGATGAA
AGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGGAATT
GTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAGCTGT
AATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAATTGT
TTTTAAAAATGGAGAAGAAATCCATGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1878#0      ------------------------------------------------------------
consensus_1878#1      CCGCCCACGCGTCCGAGATAACATAGCACACGTGGGATTGCAGAACGAACTAGAAAGTTA 60
                                                                                  

consensus_1878#0      ------------------------------------------------------------
consensus_1878#1      ACTGTTGCATATGCTGGACAATGTTTGTGGGCTTAAATAGCTGTTAGAGTATTTAATGTG 120
                                                                                  

consensus_1878#0      ------------------------------------------------------TATGTA 6
consensus_1878#1      AGGGTTGGAATTGAATGGGTACTAGTTGTTGTAAGTGTAAGAGCCACCAAGAGATATGTA 180
                                                                            ******

consensus_1878#0      TACTGCCGCCGTAGTTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTGTGTGTTTTTA 66
consensus_1878#1      TACTGCCGCCGTAGGTTGATGTTAATGTTATTAGAGCGTGTGTGTGTGTG----TTTTTA 236
                      ************** ***********************************    ******

consensus_1878#0      CAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGA 126
consensus_1878#1      CAACATCTACATGTGTCTTTCGGATGTTTCCGCTCATCTCCGTTGTCCTCTTGTTCACGA 296
                      ************************************************************

consensus_1878#0      TGAAAGATTTACTTACC-----------TCCAGTTAAAGAGATTTG-CTTCCCCGAGTGG 174
consensus_1878#1      TGAAAGATTTACTTACCACCTTCTTACCTCCAGTTAAAGAGATTTTTCTTCCCCGAGTGG 356
                      *****************           *****************  *************

consensus_1878#0      AATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAG 234
consensus_1878#1      AATTGTACGCTTTATTGCTACTCGAAGCATAACACAACACATCTGAATGTGCTTATATAG 416
                      ************************************************************

consensus_1878#0      CTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAA 294
consensus_1878#1      CTGTAATTATTAAAAGTCTTTCACACATCAAGGTTTTAGATAGTATGATAAACGATCAAA 476
                      ************************************************************

consensus_1878#0      TTGTTTTTAAAAATGGAGAAGAAATCGATGAGAGATTGTTGCATTTAGCGCTTAAAATCG 354
consensus_1878#1      TTGTTTTTAAAAATGGAGAAGAAATCCATGAG---------------------------- 508
                      ************************** *****                            

consensus_1878#0      TGGTGTTGTTTAGCAGCTGCGGTGCTGCCTACGTTTGATTCCTTTTATTTAGTTCCTATG 414
consensus_1878#1      ------------------------------------------------------------
                                                                                  

consensus_1878#0      GTCGTTTCAGTGTCATCTTGTTACAAGCAATTGTTATAGCTTTACTGTTTACCAAATATT 474
consensus_1878#1      ------------------------------------------------------------
                                                                                  

consensus_1878#0      ATAAGTGTAGTGGAGGGAATATTAAACTGATCATGGTCAGGGGGAAAAAAAAGGAAAGAT 534
consensus_1878#1      ------------------------------------------------------------
                                                                                  

consensus_1878#0      TTCACGGTTAAACTTTAAAATAACGAAATTAATCGTTCATATCATTGAAGGCACCAATTT 594
consensus_1878#1      ------------------------------------------------------------
                                                                                  

consensus_1878#0      CAAAATTTCTCGACGTAATCTAAACATTGAAATGTTCGTAAGAAAAACAAAAAATTCCAT 654
consensus_1878#1      ------------------------------------------------------------
                                                                                  

consensus_1878#0      TCCCTTAAAGATGTGCATTCAAAAAGCTTAGCTAGTTACTGTGAATATTAAAAAGAAACT 714
consensus_1878#1      ------------------------------------------------------------
                                                                                  

consensus_1878#0      GGTAATAACATAAAACCATGCAATAATCCTATTATATCGAAGTATGTACGAGCAGCA 771
consensus_1878#1      ---------------------------------------------------------