cluster # 1880

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Anopheles gambiae
cluster # 1880 cluster # 1880 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1880#0 length = 529 sequences # 1

consensus_1880#1 length = 246 sequences # 1

consensusID : consensus_1880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [CCGTGACAAGCACGCTGATCGTTCCGACCACTACGACCGAGGTGCGCCGGGCGGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCCGGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCCGGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCTGGTCGAGTACCGGACCGACACCGTTACCCGCACCTCGACCTGCACCGTGACGGAGCTGTTCCCCACCACCTACTACAGCACGTACATCTCCACCAGCTACGCGCCTCCGGTGACCGATGTCACCTACCTGACGGAAACTTCCTACCGCACGCTTACCTCCACCCAGCTCAGTACGCAAATCCGTACGCAAACGGAGACGACCTCCGTCTATCGCACCAGCACGGAGACGATCCGGGCGACGCGTACGCTCACGGAAACGGCCACCGTTACCGAGTCCTGTGCACCGCCACCACCACCGCCACTAAACAACGAGTATCT]

[+] EMBL BX628557             [CCGTGACAAGCACGCTGATCGTTCCGACCACTACGACCGAGGTGCGCCGGGCGGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCCGGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCCGGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCTGGTCGAGTACCGGACCGACACCGTTACCCGCACCTCGACCTGCACCGTGACGGAGCTGTTCCCCACCACCTACTACAGCACGTACATCTCCACCAGCTACGCGCCTCCGGTGACCGATGTCACCTACCTGACGGAAACTTCCTACCGCACGCTTACCTCCACCCAGCTCAGTACGCAAATCCGTACGCAAACGGAGACGACCTCCGTCTATCGCACCAGCACGGAGACGATCCGGGCGACGCGTACGCTCACGGAAACGGCCACCGTTACCGAGTCCTGTGCACCGCCACCACCACCGCCACTAAACAACGAGTATCT]




>consensus_1880#0
CCGTGACAAGCACGCTGATCGTTCCGACCACTACGACCGAGGTGCGCCGGGCGGTCGAAA
CACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCCGGTGACGC
ACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCCGGTCGTAC
GCGTGGAGTACGTTACGGAGCGTTACCCGCTGGTCGAGTACCGGACCGACACCGTTACCC
GCACCTCGACCTGCACCGTGACGGAGCTGTTCCCCACCACCTACTACAGCACGTACATCT
CCACCAGCTACGCGCCTCCGGTGACCGATGTCACCTACCTGACGGAAACTTCCTACCGCA
CGCTTACCTCCACCCAGCTCAGTACGCAAATCCGTACGCAAACGGAGACGACCTCCGTCT
ATCGCACCAGCACGGAGACGATCCGGGCGACGCGTACGCTCACGGAAACGGCCACCGTTA
CCGAGTCCTGTGCACCGCCACCACCACCGCCACTAAACAACGAGTATCT

consensusID : consensus_1880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence

                              [GCAGAATCGCACGAGGTGAAGCTGATCGTTCCGACCACTACGNACCGAGGTGCGCCGGGCGGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCCGGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCCGGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCNTGGTCGAGTACCGGANNCGACANCGTT]

[+] EMBL BX469432             [GCAGAATCGCACGAGGTGAAGCTGATCGTTCCGACCACTACGNACCGAGGTGCGCCGGGCGGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCCGGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCCGGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCNTGGTCGAGTACCGGANNCGACANCGTT]




>consensus_1880#1
GCAGAATCGCACGAGGTGAAGCTGATCGTTCCGACCACTACGNACCGAGGTGCGCCGGGC
GGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCC
GGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCC
GGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCNTGGTCGAGTACCGGANNCGAC
ANCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1880#0      ------CCGTGACAAGC-ACGCTGATCGTTCCGACCACTACGA-CCGAGGTGCGCCGGGC 52
consensus_1880#1      GCAGAATCGCACGAGGTGAAGCTGATCGTTCCGACCACTACGNACCGAGGTGCGCCGGGC 60
                             **    * *  * **********************  ****************

consensus_1880#0      GGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCC 112
consensus_1880#1      GGTCGAAACACAAACCAGCTACCGCACGACCACTCACACCCAAAGTGTCACACTGCCTCC 120
                      ************************************************************

consensus_1880#0      GGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCC 172
consensus_1880#1      GGTGACGCACACCTCCTCGCTAACCACCACGATTGCACGGCTCGAAACCGTCACCAGCCC 180
                      ************************************************************

consensus_1880#0      GGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCT-GGTCGAGTACCGGACC-GAC 230
consensus_1880#1      GGTCGTACGCGTGGAGTACGTTACGGAGCGTTACCCGCNTGGTCGAGTACCGGANNCGAC 240
                      **************************************  **************   ***

consensus_1880#0      ACCGTTACCCGCACCTCGACCTGCACCGTGACGGAGCTGTTCCCCACCACCTACTACAGC 290
consensus_1880#1      ANCGTT------------------------------------------------------ 246
                      * ****                                                      

consensus_1880#0      ACGTACATCTCCACCAGCTACGCGCCTCCGGTGACCGATGTCACCTACCTGACGGAAACT 350
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      TCCTACCGCACGCTTACCTCCACCCAGCTCAGTACGCAAATCCGTACGCAAACGGAGACG 410
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      ACCTCCGTCTATCGCACCAGCACGGAGACGATCCGGGCGACGCGTACGCTCACGGAAACG 470
consensus_1880#1      ------------------------------------------------------------
                                                                                  

consensus_1880#0      GCCACCGTTACCGAGTCCTGTGCACCGCCACCACCACCGCCACTAAACAACGAGTATCT 529
consensus_1880#1      -----------------------------------------------------------