These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_19#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGATAAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTTAAAGCAACCGAACAACAGCAGGAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCACTCGCCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCGTCCCCGGACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTGGCAAGCAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGACGAATCAAGCGAGCAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCAGCTAGCGTCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGATGATTTGCTGCTTACCGATTACGTCACCTGGA] [+] EMBL BM632433 [CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGATAAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTTAAAGCAACCGAACAACAGCAGGAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCACTCGCCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCGTCCCCGGACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTGGCAAGCAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGACGAATCAAGCGAGCAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCAGCTAGCGTCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGATGATTTGCTGCTTACCGATTACGTCACCTGGA] consensusID : consensus_19#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAAAAAACAATTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCCCGTCGGAACCGGTGCACTTTCGCCTGCGTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTTCCGGCGGCACCCGACCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCATCATCATCATCATCATCATCACGTTCATGTTTGTTTCACGTGCGTTTGTGCGTGTGTGTGTGTGTGCGTTTACTTGTATTTGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCGCTATTGTTGCTTGTTGCAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTT] [+] EMBL BM631955 [CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAAAAAACAATTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCCCGTCGGAACCGGTGCACTTTCGCCTGCGTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTTCCGGCGGCACCCGACCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCATCATCATCATCATCATCATCACGTTCATGTTTGTTTCACGTGCGTTTGTGCGTGTGTGTGTGTGTGCGTTTACTTGTATTTGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCGCTATTGTTGCTTGTTGCAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_19#0 CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGAT 60 consensus_19#1 ----CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAA--- 53 * * ** * * * ** * *** ** * ** ** * * consensus_19#0 AAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAG 120 consensus_19#1 AAAACAATTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCC----CGTCGGAA 109 ** * *** * ** * * ** * ** ** * *** * consensus_19#0 CCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCT 180 consensus_19#1 CCG-GTGCACTTTCGCCTGC--GTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTT 166 ** * *** ** ** * ** ** * *** **** * consensus_19#0 TCC-CAGGACCCGGGCAAGACGACGGTGGA--CGGCACTGTTAAAGCAACCGAACAACAG 237 consensus_19#1 CCGGCGGCACCCGACCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCAT 226 * * * ***** ** *** *** * *** * * *** ** ** consensus_19#0 CAGGAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCAC 297 consensus_19#1 CATCATCAT-CATCATCATCACGTTCA-TGTTTGTTTCA-CGTGCGTTTGTGCGTGT-GT 282 ** * * ** ** * **** * ** ** ** * **** consensus_19#0 TCGCCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCG 357 consensus_19#1 GTGT---GTGTGCGTTTACTTGTATT-TGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCG 338 * *** ** * ** * * * * * ** ** * * ** consensus_19#0 TCCCCGG-ACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTG- 415 consensus_19#1 CTATTGTTGCTTGTTGCAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGC 398 * ** ** * * *** * ** * * ** * * * * * consensus_19#0 -GCAAGCAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGAC 474 consensus_19#1 TGCTGGCCAAACGGGCCCACGATGGTAGCGG----CGTGGCTGTGGCCCCTTCCCAGGAC 454 ** ** *** * ** * * * * ** ** * ** * *** consensus_19#0 GAATCAAGCGAG-CAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCA 533 consensus_19#1 ---CCGGGCAAGACGACGGTGGACGG-CACTGTT-------------------------- 484 * ** ** * * * ** ** *** * consensus_19#0 GCTAGCGTCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGA 593 consensus_19#1 ------------------------------------------------------------ consensus_19#0 TGATTTGCTGCTTACCGATTACGTCACCTGGA 625 consensus_19#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||