cluster # 1900

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Anopheles gambiae
cluster # 1900 cluster # 1900 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1900#0 length = 291 sequences # 1

consensus_1900#1 length = 177 sequences # 1

consensusID : consensus_1900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [ATCGNCACGAGGTGTTAAGAGAACATCCATCTGCAGTCGANAGCTTGCCCGGGTTCCGAGTCGAGGTGGCACCATCAAGAAACATGATGATCTCGAACACGACCGGCAGCGGGTTCGGCGTTGACCGCCGCGCCAGTAGCCGCCAAATCGCGCCGGCACCGAAGACGACGGGTGCGAACGATGCTAGACGTGTTGAACCTAGTTCCTGTACAGAGGAGATAACTTGGCGAAGGACGACGATTTAGGAAGTTTGTCGCGTGTGAGTGGAGTTAAACCTCCCCAAGGGGGGTC]

[+] EMBL BX469468             [ATCGNCACGAGGTGTTAAGAGAACATCCATCTGCAGTCGANAGCTTGCCCGGGTTCCGAGTCGAGGTGGCACCATCAAGAAACATGATGATCTCGAACACGACCGGCAGCGGGTTCGGCGTTGACCGCCGCGCCAGTAGCCGCCAAATCGCGCCGGCACCGAAGACGACGGGTGCGAACGATGCTAGACGTGTTGAACCTAGTTCCTGTACAGAGGAGATAACTTGGCGAAGGACGACGATTTAGGAAGTTTGTCGCGTGTGAGTGGAGTTAAACCTCCCCAAGGGGGGTC]




>consensus_1900#0
ATCGNCACGAGGTGTTAAGAGAACATCCATCTGCAGTCGANAGCTTGCCCGGGTTCCGAG
TCGAGGTGGCACCATCAAGAAACATGATGATCTCGAACACGACCGGCAGCGGGTTCGGCG
TTGACCGCCGCGCCAGTAGCCGCCAAATCGCGCCGGCACCGAAGACGACGGGTGCGAACG
ATGCTAGACGTGTTGAACCTAGTTCCTGTACAGAGGAGATAACTTGGCGAAGGACGACGA
TTTAGGAAGTTTGTCGCGTGTGAGTGGAGTTAAACCTCCCCAAGGGGGGTC

consensusID : consensus_1900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [GATGGTAGCGGCGGTCGCGAAGATCACCTCCATCCCGGCGTCGGTCGTNATCAGCAAGAAGGCGGAAGAGAACATCCATCTGCAGTCGAAGCTGGCCCGGCTCGCAGTCCGNGGTGGCCACCATCAAGAACATGATGATCTCGNAACACGACCGGCAGCGGGTTCGGCGTNACCCGC]

[+] EMBL BX619134             [GATGGTAGCGGCGGTCGCGAAGATCACCTCCATCCCGGCGTCGGTCGTNATCAGCAAGAAGGCGGAAGAGAACATCCATCTGCAGTCGAAGCTGGCCCGGCTCGCAGTCCGNGGTGGCCACCATCAAGAACATGATGATCTCGNAACACGACCGGCAGCGGGTTCGGCGTNACCCGC]




>consensus_1900#1
GATGGTAGCGGCGGTCGCGAAGATCACCTCCATCCCGGCGTCGGTCGTNATCAGCAAGAA
GGCGGAAGAGAACATCCATCTGCAGTCGAAGCTGGCCCGGCTCGCAGTCCGNGGTGGCCA
CCATCAAGAACATGATGATCTCGNAACACGACCGGCAGCGGGTTCGGCGTNACCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1900#0      -------------------------------------------------ATCGNCACGAG 11
consensus_1900#1      GATGGTAGCGGCGGTCGCGAAGATCACCTCCATCCCGGCGTCGGTCGTNATCAGCAAGAA 60
                                                                       ***  ** ** 

consensus_1900#0      GTGTTAAGAGAACATCCATCTGCAGTCGANAGCTTGCCCGGGTTCCGAGTCGAGGTGGC- 70
consensus_1900#1      GGCGGAAGAGAACATCCATCTGCAGTCGAA-GCTGGCCCGGCTCGCAGTCCGNGGTGGCC 119
                      *    ************************  *** ****** *  *    ** ****** 

consensus_1900#0      ACCATCAAGAAACATGATGATCTCGAA-CACGACCGGCAGCGGGTTCGGCGTTGACCGCC 129
consensus_1900#1      ACCATCAAGAA-CATGATGATCTCGNAACACGACCGGCAGCGGGTTCGGCGTNACCCGC- 177
                      *********** ************* * ************************   **** 

consensus_1900#0      GCGCCAGTAGCCGCCAAATCGCGCCGGCACCGAAGACGACGGGTGCGAACGATGCTAGAC 189
consensus_1900#1      ------------------------------------------------------------
                                                                                  

consensus_1900#0      GTGTTGAACCTAGTTCCTGTACAGAGGAGATAACTTGGCGAAGGACGACGATTTAGGAAG 249
consensus_1900#1      ------------------------------------------------------------
                                                                                  

consensus_1900#0      TTTGTCGCGTGTGAGTGGAGTTAAACCTCCCCAAGGGGGGTC 291
consensus_1900#1      ------------------------------------------