cluster # 1902

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Anopheles gambiae
cluster # 1902 cluster # 1902 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1902#0 length = 744 sequences # 1

consensus_1902#1 length = 739 sequences # 1

consensusID : consensus_1902#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 744
fasta sequence

                              [CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCGGAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAGATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTGATCGTTACGCACATCGGCCTGCGCTCCAAAAATTGCACCGGCATGCACGAATGTGCGAACAGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAAGCAACTTTTATCTTGGTGGAGATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCAAATTCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGGAGACTTCCAAACCTACTAACCGAAAGAATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTACGGTGTGATACAGCGAAAGCTTGCCAGCGACTATAAGCTTGTGGCACGAAGACAGACCAAACCTACCACAGCCAGCCCTGGCGACATGCTGTACGCTAGGCTG]

[+] EMBL BX616457             [CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCGGAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAGATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTGATCGTTACGCACATCGGCCTGCGCTCCAAAAATTGCACCGGCATGCACGAATGTGCGAACAGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAAGCAACTTTTATCTTGGTGGAGATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCAAATTCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGGAGACTTCCAAACCTACTAACCGAAAGAATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTACGGTGTGATACAGCGAAAGCTTGCCAGCGACTATAAGCTTGTGGCACGAAGACAGACCAAACCTACCACAGCCAGCCCTGGCGACATGCTGTACGCTAGGCTG]




>consensus_1902#0
CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCA
ACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATA
CTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCG
GAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAG
ATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAAC
TGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTG
ATCGTTACGCACATCGGCCTGCGCTCCAAAAATTGCACCGGCATGCACGAATGTGCGAAC
AGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAAGC
AACTTTTATCTTGGTGGAGATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCAAAT
TCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGGAGACTTCCAAACCTACTAACCG
AAAGAATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTACGGTGTGATACAGCGAAAG
CTTGCCAGCGACTATAAGCTTGTGGCACGAAGACAGACCAAACCTACCACAGCCAGCCCT
GGCGACATGCTGTACGCTAGGCTG

consensusID : consensus_1902#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence

                              [GATCCCCGAGGTTATTTCAATTAAGAAATACATCTGCCCGTGAAATGTGATTTACTGTAGGAAGTATACCATACCCCGATAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAAGAGGACAAAAATGGTCTTTGGAAAAAGTGTGCGGCAATAAAATGTTTACCGACCGAGTGCATGCGTCACACATTCACAGCAATATTGACCTAAGACGTCAATGTGTGCAATGTGGCTTTACTTAAACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCACAATGGTGCGCTTTGAGTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATCGCACCTTTACCTTTCCTACAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGGAACCATCGACCCTGCGTCAGGAGCGCTACTTCATTTACGGAGCGCTGATATTTTTCGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAATACCACCGGCGGACGAATTGATCTCTTCGCAGTGCCCAATCTCGGCAAAGCCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCCGCACGCATCGATCCAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACGCACATNCGGCTGCGCTCNAAAAATNGACCGGCATGCACGAA]

[+] EMBL AL694626             [GATCCCCGAGGTTATTTCAATTAAGAAATACATCTGCCCGTGAAATGTGATTTACTGTAGGAAGTATACCATACCCCGATAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAAGAGGACAAAAATGGTCTTTGGAAAAAGTGTGCGGCAATAAAATGTTTACCGACCGAGTGCATGCGTCACACATTCACAGCAATATTGACCTAAGACGTCAATGTGTGCAATGTGGCTTTACTTAAACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCACAATGGTGCGCTTTGAGTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATCGCACCTTTACCTTTCCTACAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGGAACCATCGACCCTGCGTCAGGAGCGCTACTTCATTTACGGAGCGCTGATATTTTTCGCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGTTCGACACCAATACCACCGGCGGACGAATTGATCTCTTCGCAGTGCCCAATCTCGGCAAAGCCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCCGCACGCATCGATCCAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACGCACATNCGGCTGCGCTCNAAAAATNGACCGGCATGCACGAA]




>consensus_1902#1
GATCCCCGAGGTTATTTCAATTAAGAAATACATCTGCCCGTGAAATGTGATTTACTGTAG
GAAGTATACCATACCCCGATAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAAGAGGA
CAAAAATGGTCTTTGGAAAAAGTGTGCGGCAATAAAATGTTTACCGACCGAGTGCATGCG
TCACACATTCACAGCAATATTGACCTAAGACGTCAATGTGTGCAATGTGGCTTTACTTAA
ACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCACAATGGTGCGCTTTGA
GTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATCGCACCTTTACCTTTCCTA
CAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGGAACCATCGACCCTGCGTC
AGGAGCGCTACTTCATTTACGGAGCGCTGATATTTTTCGCGATCGTCGGATTCTCAACCG
CCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATACTGT
TCGACACCAATACCACCGGCGGACGAATTGATCTCTTCGCAGTGCCCAATCTCGGCAAAG
CCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAGCTAGATGCCGCACGCATCGATC
CAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACGCACATNCGGCTGCGCTCNAAAA
ATNGACCGGCATGCACGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1902#0      CGTCAGTAGCGCTACTTCATTTACGGAGCGCTGATATTTTTTGCGATCGTCGGATTCTCA 60
consensus_1902#1      GATCCCCGAGGTTATTTCAATTAAGAAATAC--AT-CTGCCCGTGAAATGTGATTTACTG 57
                        **      * ** **** *** * *   *  **  *    * **     *  **    

consensus_1902#0      ACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCTGACATTGACCGGGAGATA 120
consensus_1902#1      TAGGAAGTATACCATACCCCGA--TAGGTTGACTTCCTTCTTTAAGAATCTTACAAAGAA 115
                         *   * ***   * *  **   ****   *   *    * *           *   *

consensus_1902#0      CTGTTCGACACCAACTACCACCGGCGGACGAGTAAGTGAAAAAGCACCAACTTCCATGCG 180
consensus_1902#1      GAG---GACAAAAATGGTCTTTGG--AAAAAGTGTGCGGCAATAAAATGTTTACCGACCG 170
                        *   ****  **    *   **   *  ***  * *  **   *     * **   **

consensus_1902#0      GAATTGTGGATAGAATTTGGACGAAATGTACCAAGCTAAGCTGCCGATTGATTCCGACAG 240
consensus_1902#1      AGTGCATGCGTCACACATTCACAGCA-ATATTGACCTAAGACGTCAATGTGTGC---AAT 226
                            **  *   *  *  **   *  **   * *****  * * **   * *    * 

consensus_1902#0      ATTGATCTCTTCGCAGTGCCCAATCTCGGCAACAGCCACATGATCATCGAACGGCGTAAC 300
consensus_1902#1      GTGGCTTTACTTAAACCCGCCCTTTGCGACAATGGGCAATATGTTTGCGTCCGATGCA-C 285
                       * * * *  *   *    **  *  ** ***  * **     *   **  **  * * *

consensus_1902#0      TGGGGTTCGCAGCTAGATGCGCACGCATCGATCCAATTGGAGCATCCGGTTCAGTACGTG 360
consensus_1902#1      AATGGTGCGC--TTTGA-GTGTAGAGCTTGACTGAATTNTTATGACCTCGTCTTCCCATC 342
                         *** ***   * ** * * *    * **   ****       **   **    * * 

consensus_1902#0      ATCGTTACGCACATCGGCCTGC--GCTCCAAAAATTGCACCGGCATGCACGAATGTGCGA 418
consensus_1902#1      GCACCTTTACCTTTCCTACAGCCGGCCGCAACAATCAGAACCGCGGACTACCTTCAGCGG 402
                           *   *   **   * **  **  *** ***   * * **   *     *  *** 

consensus_1902#0      ACAGGATGCGCATGCTACAGGATGCAGCCATCGGTGAGCGGAATCTGCCCGACATTCCAA 478
consensus_1902#1      AACCATCGACCCTGCGTCAGGA-GCGCTACTTCATTTACGGAGC---GCTGATATTTTTC 458
                      *      *  * ***  ***** **     *   *   ****      * ** ***    

consensus_1902#0      GCAACTTTTATCTTGGTGGA-GATGGCAACGTGTACGTGGGCCGTGGTTGGGATATTGCA 537
consensus_1902#1      GCGATCGTCGGATTCTCAACCGCCATCTACTTCATCGTGAACCAGGTGCGCGGTCCAGCT 518
                      ** *   *    **       *    * ** *   ****  **  *   * * *   ** 

consensus_1902#0      AATTCGTATCACAATCGAACACTGTCCGTCTGCTTCATAGG-AGACTTCCAAACCTACTA 596
consensus_1902#1      GACATTGACCGGGAGATACTGTTCGACACCAATACCACCGGCGGACGAATTGATCTCTTC 578
                       *     * *   *   *    *   *  *     **  **  ***      * **  * 

consensus_1902#0      ACCGAAAG-AATCTCAATTCTCCGCCTTGCACCATCTCCTGACGTA-CGGTGTGATACAG 654
consensus_1902#1      GCAGTGCCCAATCTCGGCAAAGCCACAATGATCATCGAACGGCGTAACTGGGGTTCGCAG 638
                       * *     ******       *  *    * ****    * **** * * *     ***

consensus_1902#0      CGAAAGCTTGCCAGCGACTATAAGCTTGTGGCA---CGAAGACAG-ACCAAACC--TAC- 707
consensus_1902#1      CTAGATGCCGCACGCATCGATCCAATTGGAGCAATCCGGGTTCAGTACGTGATCGTTACG 698
                      * * *    **  **  * **    ***  ***   **    *** **   * *  *** 

consensus_1902#0      CACAGCCAGCCCTGG-CGACATGCTGTACGCTAGGCTG--- 744
consensus_1902#1      CACATNCGGCTGCGCTCNAAAAATNGACCGGCATGCACGAA 739
                      ****  * **   *  * * *    *  **  * **