cluster # 1905

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Anopheles gambiae
cluster # 1905 cluster # 1905 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1905#0 length = 503 sequences # 1

consensus_1905#1 length = 212 sequences # 1

consensusID : consensus_1905#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGCACCGTCTGCTGCCACGAGCGAGC]

[+] EMBL BM611536             [CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGCACCGTCTGCTGCCACGAGCGAGC]




>consensus_1905#0
CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAAC
ACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACT
GTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAAC
AACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGT
AACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTG
CTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAG
TCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGC
TGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGC
ACCGTCTGCTGCCACGAGCGAGC

consensusID : consensus_1905#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAGCCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACAT]

[+] EMBL BM603752             [GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAGCCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACAT]




>consensus_1905#1
GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAG
CCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA
ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA
CTGTGGAAGCTGAAGGTTTGGCCGACCGACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1905#0      ------------------------------------------------------------
consensus_1905#1      GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAG 60
                                                                                  

consensus_1905#0      -CCGCCCACGC-GTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA 58
consensus_1905#1      CCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA 120
                       ***     ** * *  *******************************************

consensus_1905#0      ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA 118
consensus_1905#1      ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA 180
                      ************************************************************

consensus_1905#0      CTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACA 178
consensus_1905#1      CTGTGGAAGCTGAAGGTTTGGCCGACCGACAT---------------------------- 212
                      ********************************                            

consensus_1905#0      ACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCA 238
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      GTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCAT 298
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      TGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATAC 358
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      AGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTT 418
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      GCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAG 478
consensus_1905#1      ------------------------------------------------------------
                                                                                  

consensus_1905#0      GCACCGTCTGCTGCCACGAGCGAGC 503
consensus_1905#1      -------------------------