cluster # 1909

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Anopheles gambiae
cluster # 1909 cluster # 1909 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1909#0 length = 585 sequences # 1

consensus_1909#1 length = 513 sequences # 1

consensusID : consensus_1909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCGCACACAGACACACACACACCCACAGCCACACATGTAAACACATACGAGTGCATGTGACGCAGCTCACCCCATGTTAGTAGTCGTTTTAGCTTGCTTGCGCGCTTTACGTTTGTAGACATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCAGTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACCGTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGCAGGCTCCAAAATCCCATCCAATACACGCACACACACAGACGCACACATCCACAAAAGCACACAAACACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCCCCCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTACGGGTGGGAAATATAAAAAAGAGCAAGAAAGCAAGAGAGAGAGAGAAAGAGAAAGTAAGAGAGAAGGAGAATGAGTAGTTGCAGAACATAACAAATAGCAAGTGAACAA]

[+] EMBL BM639165             [CCGCACACAGACACACACACACCCACAGCCACACATGTAAACACATACGAGTGCATGTGACGCAGCTCACCCCATGTTAGTAGTCGTTTTAGCTTGCTTGCGCGCTTTACGTTTGTAGACATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCAGTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACCGTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGCAGGCTCCAAAATCCCATCCAATACACGCACACACACAGACGCACACATCCACAAAAGCACACAAACACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCCCCCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTACGGGTGGGAAATATAAAAAAGAGCAAGAAAGCAAGAGAGAGAGAGAAAGAGAAAGTAAGAGAGAAGGAGAATGAGTAGTTGCAGAACATAACAAATAGCAAGTGAACAA]




>consensus_1909#0
CCGCACACAGACACACACACACCCACAGCCACACATGTAAACACATACGAGTGCATGTGA
CGCAGCTCACCCCATGTTAGTAGTCGTTTTAGCTTGCTTGCGCGCTTTACGTTTGTAGAC
ATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCA
GTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACC
GTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGC
AGGCTCCAAAATCCCATCCAATACACGCACACACACAGACGCACACATCCACAAAAGCAC
ACAAACACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCCCCCA
TTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTACGGG
TGGGAAATATAAAAAAGAGCAAGAAAGCAAGAGAGAGAGAGAAAGAGAAAGTAAGAGAGA
AGGAGAATGAGTAGTTGCAGAACATAACAAATAGCAAGTGAACAA

consensusID : consensus_1909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CCGATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCAGTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACCGTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGCAGGCTCCAAAATCCCATCCAATACACACACACAGACGCACACATCCACAAAGGCTCACGCACACAAACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCCCCCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTACGGGCGGGAAATATAAAAGAGCAAGAAAGCAAGAGAGAAAGAGAAAGAAAGAAAGATAGAGGAGCATTAGAGTGTTGCGCATTCAGAACATTGTACATAACGCCGCATTGTTGTATAGTTGTGCTTAAGTTTGGCTTATTGTGAAGAAGCAAGC]

[+] EMBL BM576391             [CCGATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCAGTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACCGTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGCAGGCTCCAAAATCCCATCCAATACACACACACAGACGCACACATCCACAAAGGCTCACGCACACAAACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCCCCCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTACGGGCGGGAAATATAAAAGAGCAAGAAAGCAAGAGAGAAAGAGAAAGAAAGAAAGATAGAGGAGCATTAGAGTGTTGCGCATTCAGAACATTGTACATAACGCCGCATTGTTGTATAGTTGTGCTTAAGTTTGGCTTATTGTGAAGAAGCAAGC]




>consensus_1909#1
CCGATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTG
GCAGTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCT
ACCGTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAA
AGCAGGCTCCAAAATCCCATCCAATACACACACACAGACGCACACATCCACAAAGGCTCA
CGCACACAAACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCCC
CCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTAC
GGGCGGGAAATATAAAAGAGCAAGAAAGCAAGAGAGAAAGAGAAAGAAAGAAAGATAGAG
GAGCATTAGAGTGTTGCGCATTCAGAACATTGTACATAACGCCGCATTGTTGTATAGTTG
TGCTTAAGTTTGGCTTATTGTGAAGAAGCAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1909#0      CCGCACACAGACACACACACACCCACAGCCACACATGTAAACACATACGAGTGCATGTGA 60
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      CGCAGCTCACCCCATGTTAGTAGTCGTTTTAGCTTGCTTGCGCGCTTTACGTTTGTAGAC 120
consensus_1909#1      ---------------------------------------------------------CCG 3
                                                                                  

consensus_1909#0      ATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCA 180
consensus_1909#1      ATTTTAAAGGCCCACCCTCACGCTCACGAACGAAAGCGAACGAGTCGGACCGTTGTGGCA 63
                      ************************************************************

consensus_1909#0      GTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACC 240
consensus_1909#1      GTATTTTAGTATAAAAAATAATATTAACATAGTATTTGTGGTTCCACATTCTGTTCTACC 123
                      ************************************************************

consensus_1909#0      GTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGC 300
consensus_1909#1      GTTAGAGCCGGGCTTCGTCCTATGACCGCTAAAGGATTCGTTGCAAGTTAAAACAAAAGC 183
                      ************************************************************

consensus_1909#0      AGGCTCCAAAATCCCATCCAATACACGCACACACACAGACGCACACATCCACAAAAGCAC 360
consensus_1909#1      AGGCTCCAAAATCCCATCCAATAC----ACACACACAGACGCACACATCCACAAAGGCTC 239
                      ************************    *************************** ** *

consensus_1909#0      ACAAACACA----CGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCC 416
consensus_1909#1      ACGCACACAAACACGCACAAATTTAACTGATAATCCAATCCTTAATCACTAATACTCTCC 299
                      **  *****    ***********************************************

consensus_1909#0      CCCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTA 476
consensus_1909#1      CCCATTTGCCCACCATTTAAAAACAATCGGGGCTTTACGCTTCACTTAGGTTTTCTCCTA 359
                      ************************************************************

consensus_1909#0      CGGGTGGGAAATATAAAAAAGAGCAAGAAAGCAAGAGAGAGAGAGAAAGAGAAAGTAAGA 536
consensus_1909#1      CGGGCGGGAAATATAAAA--GAGCAAGAAAGCAAGAGAGAAAGAGAAAGAAAGAAAGATA 417
                      **** *************  ******************** ********* * *   * *

consensus_1909#0      GAGAAGGA---GAATGA-GTAGTTGCAGAACATAACAAATAGCAAGTGAACAA------- 585
consensus_1909#1      GAGGAGCATTAGAGTGTTGCGCATTCAGAACATTGTACATAACGCCGCATTGTTGTATAG 477
                      *** ** *   ** **  *    * ********   * *** *     *           

consensus_1909#0      ------------------------------------
consensus_1909#1      TTGTGCTTAAGTTTGGCTTATTGTGAAGAAGCAAGC 513