cluster # 1932

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Anopheles gambiae
cluster # 1932 cluster # 1932 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1932#0 length = 632 sequences # 1

consensus_1932#1 length = 620 sequences # 1

consensusID : consensus_1932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGCATTTCATCAATTTCGCATAAATGCGATAGAAG]

[+] EMBL BM620821             [CCGCCCACGCGTCCGCCCACGCGTCCGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGCATTTCATCAATTTCGCATAAATGCGATAGAAG]




>consensus_1932#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTT
TAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATT
GGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTC
GAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTG
CATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAAC
TAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAA
ATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGG
TTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGA
AATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAA
TTCGCTCATAACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGC
ATTTCATCAATTTCGCATAAATGCGATAGAAG

consensusID : consensus_1932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAATGTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATC]

[+] EMBL BM603341             [CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAATGTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCTAGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAATCTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGCAAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGATACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCAGGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGAGCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAATCTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGAATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCATAACTTTTGAAAGACTTTATC]




>consensus_1932#1
CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAAT
GTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCT
AGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAAT
CTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGC
AAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGAT
ACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCA
GGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGA
GCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAAT
CTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGA
ATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCAT
AACTTTTGAAAGACTTTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1932#0      -------------------------------------------------CCGCCCACG-C 10
consensus_1932#1      CCGCAAATTTTCAAGAATAAGATTAACAACTGTAAAGTTATTGAAGTGATTGTAGATAAT 60
                                                                         *   *    

consensus_1932#0      GTCCGCCCACGCGTC-CGGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCT 69
consensus_1932#1      GTTTGACTGTAAACCATCGGATTGGCGTGTTTCTTCGAAGCACGAACTTTTTAACACCCT 120
                      **  * *       *   ******************************************

consensus_1932#0      AGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAAT 129
consensus_1932#1      AGCACAGGATGGCGGTCTTTCGTTTGGCCTTTACTTTGAAACAAGCACATTGGTAACAAT 180
                      ************************************************************

consensus_1932#0      CTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGC 189
consensus_1932#1      CTTCGGTGTTGAAATATATCAATTGTACGATCTATTAGTGCACGATTTGTCGAAAAATGC 240
                      ************************************************************

consensus_1932#0      AAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGAT 249
consensus_1932#1      AAGAGAAAGGATTCAAAAACTGATGCTGCTACAGAACACATCAAGTCGTTGCATACGGAT 300
                      ************************************************************

consensus_1932#0      ACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCA 309
consensus_1932#1      ACAAAGATTGGAAATTACGCGGTTTTTGCGTCTTGTTTTAGGAAACGCAACTAGATTGCA 360
                      ************************************************************

consensus_1932#0      GGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGA 369
consensus_1932#1      GGGAACAACATTATGTGATGGTATCTCAATCATTTTAAATTGCCTGCCAAAATTAATGGA 420
                      ************************************************************

consensus_1932#0      GCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAAT 429
consensus_1932#1      GCCTCTACTAATATACGGATGGAACAGCGTATTCGATGGAGAATACTGTGGTTATGAAAT 480
                      ************************************************************

consensus_1932#0      CTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGA 489
consensus_1932#1      CTATCACGGAGTGTTAGAATGGCGATGGCTTATTCTGCTGCTTGCAAAGGAAATGAAAGA 540
                      ************************************************************

consensus_1932#0      ATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCAT 549
consensus_1932#1      ATTGATGAACACATCTAATACCGATATTGGAAAATGCTTCAGCAAAAGAAATTCGCTCAT 600
                      ************************************************************

consensus_1932#0      AACTTTTGAAAGACTTTATCGTACACTGTTGATCGATATGCTGGAACTGGCATTTCATCA 609
consensus_1932#1      AACTTTTGAAAGACTTTATC---------------------------------------- 620
                      ********************                                        

consensus_1932#0      ATTTCGCATAAATGCGATAGAAG 632
consensus_1932#1      -----------------------