These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [ATCCCGAGGTTAATGGATGGTTCGCTGCGGANACTCGATCACCAGCATCTGTGCGGTGGCACGCTGCTAAGCAACCGGTTCGTCCTGTCGTCGGCCAACTGCTATGTCGGGGCGGCTGGCAACGGCCACCATGGCGGTGGCAGGATCCCGCTTCCTCAACACGGCCGCCATTCCGTACTATGGCATTCAGATCATAACGCACCCGAACTTTAACGTCAACACGCTCGAGCATGATGTCGCCCTGTTCCAGACGGCACTGCAGTTCATTTTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGGGCGTTCGTGCCCGTGTCTTTGGCTGGGGAGCTTCGCAGGCCAACGGAGGAAACACCAACGCGCTGCAATTTTTTGAACGTAAACACGCTGAGCAATGACGACTGTGCCAACATTCCTCGGTGCGGAGGGATGGCGCATTGGACCGTACCTCGCTGTGTACGCTGACCCGCGAGGACAGGGCATCTGTGAGAGGGCGATGCAGGGCGGCGCA] [+] EMBL AL933187 [ATCCCGAGGTTAATGGATGGTTCGCTGCGGANACTCGATCACCAGCATCTGTGCGGTGGCACGCTGCTAAGCAACCGGTTCGTCCTGTCGTCGGCCAACTGCTATGTCGGGGCGGCTGGCAACGGCCACCATGGCGGTGGCAGGATCCCGCTTCCTCAACACGGCCGCCATTCCGTACTATGGCATTCAGATCATAACGCACCCGAACTTTAACGTCAACACGCTCGAGCATGATGTCGCCCTGTTCCAGACGGCACTGCAGTTCATTTTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGGGCGTTCGTGCCCGTGTCTTTGGCTGGGGAGCTTCGCAGGCCAACGGAGGAAACACCAACGCGCTGCAATTTTTTGAACGTAAACACGCTGAGCAATGACGACTGTGCCAACATTCCTCGGTGCGGAGGGATGGCGCATTGGACCGTACCTCGCTGTGTACGCTGACCCGCGAGGACAGGGCATCTGTGAGAGGGCGATGCAGGGCGGCGCA] consensusID : consensus_1937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTTGTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCCGATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAACTCGATCAACCAGCATCTGTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTTNGTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTCAACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAACGTCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTGCCCGTGTCTT] [+] EMBL BX468522 [AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTTGTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCCGATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAACTCGATCAACCAGCATCTGTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTTNGTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTCAACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAACGTCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNTGACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTGCCCGTGTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1937#0 ------------------------------------------------------------ consensus_1937#1 AGGGCAAGAANCGGCANTGTAGGCATGCTTGATNTTGCGGTGTATCGATGCGCNCTGCTT 60 consensus_1937#0 ------------------------------------------------------------ consensus_1937#1 GTTGGTTGCTTCCGCGATCGCTGGACCGAACGGGCGCATCGTTAGGTGGCATTGATAGCC 120 consensus_1937#0 ----ATCCCGAGGT-----TAATGGATGGTT-CGCTGCGGANACTCGATCA-CCAGCATC 49 consensus_1937#1 GATGGGCCGGAGATGCGCCCATGGGATGGTTTCGCTGCGGAA-CTCGATCAACCAGCATC 179 ** *** * * ******** ********* ******** ******** consensus_1937#0 TGTGCGGTGGCACGCTGCTAAG-CAACC-GGTTCGTCC-TGTCGTCGGCC--AACTGCTA 104 consensus_1937#1 TGTGCGGTGGCACGCTGCTAAGGCAACCTGGTTCGTCCATGTCGTCGGCCTAAACTGCTT 239 ********************** ***** ********* *********** ******* consensus_1937#0 TGTCGG--GGCGGCT--GGCAA-CGGCCACCATGGCGGTG-GCAGGATCCCGC-TTCCTC 157 consensus_1937#1 NGTCGGCGGACGGACTGNGCAATCGGCCACCATGGCGGTGTGCAGGATCCCGCGTTCCTC 299 ***** * *** **** ***************** ************ ****** consensus_1937#0 AACACGGCCGC-CATTCCGTACTATGGCATTCAG-ATCATAACGCACCCG-AACTTTAAC 214 consensus_1937#1 AACACGGCCGCTCATTCCGTACTATGGCATTCAGGATCATAACGCACCCGTAACTTTAAC 359 *********** ********************** *************** ********* consensus_1937#0 GTCAA-CACGCTCG-AGCATGATGTCGCCCTGTTCCAGAC-GGCACTGCAGTTCATTTT- 270 consensus_1937#1 GTCAAGCACGCTCGTAGCATGATGTCGCCCTGTTCCAGACTGGCACTGCAGTTCATTTNT 419 ***** ******** ************************* ***************** consensus_1937#0 GACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTG-GGCGTTCGTG 329 consensus_1937#1 GACCCAATCGGTCCAACCGCTGCCACTGTCGGCTGATGTGATTGGCGTGTGGCGTTCGTG 479 ************************************************* ********** consensus_1937#0 CCCGTGTCTTTGGCTGGGGAGCTTCGCAGGCCAACGGAGGAAACACCAACGCGCTGCAAT 389 consensus_1937#1 CCCGTGTCTT-------------------------------------------------- 489 ********** consensus_1937#0 TTTTTGAACGTAAACACGCTGAGCAATGACGACTGTGCCAACATTCCTCGGTGCGGAGGG 449 consensus_1937#1 ------------------------------------------------------------ consensus_1937#0 ATGGCGCATTGGACCGTACCTCGCTGTGTACGCTGACCCGCGAGGACAGGGCATCTGTGA 509 consensus_1937#1 ------------------------------------------------------------ consensus_1937#0 GAGGGCGATGCAGGGCGGCGCA 531 consensus_1937#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||