cluster # 1941

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Anopheles gambiae
cluster # 1941 cluster # 1941 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1941#0 length = 623 sequences # 1

consensus_1941#1 length = 361 sequences # 1

consensusID : consensus_1941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [AGAATCCCCCGAGGGTNTGTGGAGGCGGAGGTGGAGGACGGTGATTGTTAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGCGACGATTGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGCGAAAATATAGATTTACGCCGCCAGCTAAAACACGCTACGCGTATGGATTCCTCCTGTCGGGACGGTCCATCCGCCACCGGGTACGGTTGTTGCCGAACGGGGCAACGGCGGGGATTCGCTCGATCGCCATTTGAACGGTATGCAAGAAACAAGNANGCAAAACGGGTTTTACCCGGGGCGGCCTGGGAACAAGGTTAGCAACCGGAAGGCCGAAGGGGACACCACGCNGAGGCTCCNGAACCACGGTATCCCCAAGGGACACCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGGCAACGCGCAGCAAGGCAAGGTACGCCNAGCCACGAGTGCCNCCAGGCAAGTGCAATTTATAGTGCCGAAGTGTAAACAGGACGGAACCCGNNGTAACAGAACCCCCGGGGGACAGCAAAACCCCAAACTGGGTGAATTGGGGANATCCCCCGGACATGTGGCGCCGGCG]

[+] EMBL AL929944             [AGAATCCCCCGAGGGTNTGTGGAGGCGGAGGTGGAGGACGGTGATTGTTAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGCGACGATTGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGCGAAAATATAGATTTACGCCGCCAGCTAAAACACGCTACGCGTATGGATTCCTCCTGTCGGGACGGTCCATCCGCCACCGGGTACGGTTGTTGCCGAACGGGGCAACGGCGGGGATTCGCTCGATCGCCATTTGAACGGTATGCAAGAAACAAGNANGCAAAACGGGTTTTACCCGGGGCGGCCTGGGAACAAGGTTAGCAACCGGAAGGCCGAAGGGGACACCACGCNGAGGCTCCNGAACCACGGTATCCCCAAGGGACACCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGGCAACGCGCAGCAAGGCAAGGTACGCCNAGCCACGAGTGCCNCCAGGCAAGTGCAATTTATAGTGCCGAAGTGTAAACAGGACGGAACCCGNNGTAACAGAACCCCCGGGGGACAGCAAAACCCCAAACTGGGTGAATTGGGGANATCCCCCGGACATGTGGCGCCGGCG]




>consensus_1941#0
AGAATCCCCCGAGGGTNTGTGGAGGCGGAGGTGGAGGACGGTGATTGTTAGGGCGGAAAC
ATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGCGACGATTGCAGCGGCGCGGCACGG
AGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGCGAAAATATAGATTTACGCCGC
CAGCTAAAACACGCTACGCGTATGGATTCCTCCTGTCGGGACGGTCCATCCGCCACCGGG
TACGGTTGTTGCCGAACGGGGCAACGGCGGGGATTCGCTCGATCGCCATTTGAACGGTAT
GCAAGAAACAAGNANGCAAAACGGGTTTTACCCGGGGCGGCCTGGGAACAAGGTTAGCAA
CCGGAAGGCCGAAGGGGACACCACGCNGAGGCTCCNGAACCACGGTATCCCCAAGGGACA
CCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGGCAACGCGCAGCAAGGCAAGGTACGCC
NAGCCACGAGTGCCNCCAGGCAAGTGCAATTTATAGTGCCGAAGTGTAAACAGGACGGAA
CCCGNNGTAACAGAACCCCCGGGGGACAGCAAAACCCCAAACTGGGTGAATTGGGGANAT
CCCCCGGACATGTGGCGCCGGCG

consensusID : consensus_1941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAGGAGGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGCGACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTGTTCGGCACGGTCATCGCCACGGTACGGTGTTGCCGACGGCCAAACGCGGCATCCGCTCGATCGCATGGGACGTAGCAGAACAGCAGCAACGTTTACCGGCGCTTGGACAGTAGCACGAGCGA]

[+] EMBL AL694823             [AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAGGAGGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGCGACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGCGGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTGTTCGGCACGGTCATCGCCACGGTACGGTGTTGCCGACGGCCAAACGCGGCATCCGCTCGATCGCATGGGACGTAGCAGAACAGCAGCAACGTTTACCGGCGCTTGGACAGTAGCACGAGCGA]




>consensus_1941#1
AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAG
GAGGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGCG
ACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAGC
GGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTGT
TCGGCACGGTCATCGCCACGGTACGGTGTTGCCGACGGCCAAACGCGGCATCCGCTCGAT
CGCATGGGACGTAGCAGAACAGCAGCAACGTTTACCGGCGCTTGGACAGTAGCACGAGCG
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1941#0      -----------------------AGAATCCCCCGAGGGTNTG-TGGAGGCGGAGGTGGAG 36
consensus_1941#1      AATCCCCGAGGTTACGGCGAGGGTGTGTTGGTGGAGGAAGAGGTGGAGGCGGAGGTGGAG 60
                                              *  *     ****    * *****************

consensus_1941#0      GACGGTGATTGTTAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATTGCGAACGTTGC 96
consensus_1941#1      GA-GGTGATTGTGAGGGCGGAAACATGGCAAAGGTGGCGGGCAGTGATGGCGAACGTGGC 119
                      ** ********* *********************************** ******** **

consensus_1941#0      GACGATTGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAG 156
consensus_1941#1      GACGATGGCAGCGGCGCGGCACGGAGCAGGCTGCTGGAGGAGCGTGTAAAGGTGCTGGAG 179
                      ****** *****************************************************

consensus_1941#0      CGCGAAAATATAGATTTACGCCGCCAGCTAAAACACGCTACGCGTA-TGGATTCCTCCTG 215
consensus_1941#1      CGGGAAAATATAGATTTACGCCGCCAGCTAGAACACGCTACGCGTAATGGATTCCTCCTG 239
                      ** *************************** *************** *************

consensus_1941#0      T-CGGGACGGTCCATCCGCCACCGGGTACGGTTGTTGCCGAACGGGGCAACGGCGGGGAT 274
consensus_1941#1      TTCGGCACGGTC--ATCGCCAC--GGTACGGT-GTTGCCGA--CGGCCAAACGCGGC-AT 291
                      * *** ******    ******  ******** ********   ** ***  ****  **

consensus_1941#0      TCGCTCGATCGCCATTTGAACGGTATGCAAGAAACAAGNANGCAAAACGGGTTTTACCCG 334
consensus_1941#1      CCGCTCGATCGC-------ATGGGACGTAGCAGAACAGCAGC---AACG---TTTACC-- 336
                       ***********       * ** * * *  * *  ** *     ****   ******  

consensus_1941#0      GGGCGGCCTGGGAACAAGGTTAGCAACCGGAAGGCCGAAGGGGACACCACGCNGAGGCTC 394
consensus_1941#1      -GGCGCTTGGACAGTAGCACGAGCGA---------------------------------- 361
                       ****    *  *  *     *** *                                  

consensus_1941#0      CNGAACCACGGTATCCCCAAGGGACACCAAGGCTTCCGTGAAGTCCACAGGCCAGCAAGG 454
consensus_1941#1      ------------------------------------------------------------
                                                                                  

consensus_1941#0      CAACGCGCAGCAAGGCAAGGTACGCCNAGCCACGAGTGCCNCCAGGCAAGTGCAATTTAT 514
consensus_1941#1      ------------------------------------------------------------
                                                                                  

consensus_1941#0      AGTGCCGAAGTGTAAACAGGACGGAACCCGNNGTAACAGAACCCCCGGGGGACAGCAAAA 574
consensus_1941#1      ------------------------------------------------------------
                                                                                  

consensus_1941#0      CCCCAAACTGGGTGAATTGGGGANATCCCCCGGACATGTGGCGCCGGCG 623
consensus_1941#1      -------------------------------------------------