cluster # 1943

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Anopheles gambiae
cluster # 1943 cluster # 1943 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1943#0 length = 571 sequences # 1

consensus_1943#1 length = 187 sequences # 1

consensusID : consensus_1943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [GATCCCGAGGTTATACGTCACTAAGTGCAGTGCTCGAATCTTCCATTCACGATGGTCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCATACGCCGATTCGGCCAAGGAGGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACGAGCCCCGGTTCCCGCTGTTCGGTGGGCTCGCCGTGGAGCGATCGAACGACTACGAGGTCCGTGCCTACGGCGCCCGCTCGAACGAGGACCTTGCCGAACGGGCGGTCCGCTACCTTGCCTCGCACACGCTCAAGTTCAGCGTTCCGTCCGAGGAGAACACCGTTGAAGAAGCTCGCAGCAGCCGCCTGAAGAAGATGCTGTTGCCTCTGCTGCTGGCAATGAAGCTGAAGATGGCCGTCGTGCTGCCCATCCTGTTGGCCATCGTTAAGTTCATCTCGCTGAAGGGCCTGATCGCCGGTCTGATGGCTCTCAAGTTCTCCATCTTCACCGTGCTGAACGGATCTGTTCCAGAAGAAGCAGGAGCGCGTGACCACCGCTTACATCACTAGCGCCCAG]

[+] EMBL AL694832             [GATCCCGAGGTTATACGTCACTAAGTGCAGTGCTCGAATCTTCCATTCACGATGGTCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCATACGCCGATTCGGCCAAGGAGGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACGAGCCCCGGTTCCCGCTGTTCGGTGGGCTCGCCGTGGAGCGATCGAACGACTACGAGGTCCGTGCCTACGGCGCCCGCTCGAACGAGGACCTTGCCGAACGGGCGGTCCGCTACCTTGCCTCGCACACGCTCAAGTTCAGCGTTCCGTCCGAGGAGAACACCGTTGAAGAAGCTCGCAGCAGCCGCCTGAAGAAGATGCTGTTGCCTCTGCTGCTGGCAATGAAGCTGAAGATGGCCGTCGTGCTGCCCATCCTGTTGGCCATCGTTAAGTTCATCTCGCTGAAGGGCCTGATCGCCGGTCTGATGGCTCTCAAGTTCTCCATCTTCACCGTGCTGAACGGATCTGTTCCAGAAGAAGCAGGAGCGCGTGACCACCGCTTACATCACTAGCGCCCAG]




>consensus_1943#0
GATCCCGAGGTTATACGTCACTAAGTGCAGTGCTCGAATCTTCCATTCACGATGGTCGCT
AAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCATACGCC
GATTCGGCCAAGGAGGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACGAGCCC
CGGTTCCCGCTGTTCGGTGGGCTCGCCGTGGAGCGATCGAACGACTACGAGGTCCGTGCC
TACGGCGCCCGCTCGAACGAGGACCTTGCCGAACGGGCGGTCCGCTACCTTGCCTCGCAC
ACGCTCAAGTTCAGCGTTCCGTCCGAGGAGAACACCGTTGAAGAAGCTCGCAGCAGCCGC
CTGAAGAAGATGCTGTTGCCTCTGCTGCTGGCAATGAAGCTGAAGATGGCCGTCGTGCTG
CCCATCCTGTTGGCCATCGTTAAGTTCATCTCGCTGAAGGGCCTGATCGCCGGTCTGATG
GCTCTCAAGTTCTCCATCTTCACCGTGCTGAACGGATCTGTTCCAGAAGAAGCAGGAGCG
CGTGACCACCGCTTACATCACTAGCGCCCAG

consensusID : consensus_1943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [AAGTGTTGTTCTCCGTACCGTCCACTAAGTGCAGTGCTCGAATCCTTCCATTCACGATGGTCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCATACGCCGATTCGGCCAAGGANGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACGAGCCCCC]

[+] EMBL BX628701             [AAGTGTTGTTCTCCGTACCGTCCACTAAGTGCAGTGCTCGAATCCTTCCATTCACGATGGTCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCATACGCCGATTCGGCCAAGGANGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACGAGCCCCC]




>consensus_1943#1
AAGTGTTGTTCTCCGTACCGTCCACTAAGTGCAGTGCTCGAATCCTTCCATTCACGATGG
TCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCAT
ACGCCGATTCGGCCAAGGANGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACG
AGCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1943#0      ----GATCCCGAGGTTATACGTCACTAAGTGCAGTGCTCGAATC-TTCCATTCACGATGG 55
consensus_1943#1      AAGTGTTGTTCTCCGTACCGTCCACTAAGTGCAGTGCTCGAATCCTTCCATTCACGATGG 60
                          * *        **     ********************** ***************

consensus_1943#0      TCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCAT 115
consensus_1943#1      TCGCTAAGCGTTGTTTCCTGGTTGCCGCGTTGGCGGTGGTTGCCTTCGGTGCGGTGGCAT 120
                      ************************************************************

consensus_1943#0      ACGCCGATTCGGCCAAGGAGGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACG 175
consensus_1943#1      ACGCCGATTCGGCCAAGGANGAATCGGCCATGATCAACCTGATCAATGAGATCGACAACG 180
                      ******************* ****************************************

consensus_1943#0      AGCCCCGGTTCCCGCTGTTCGGTGGGCTCGCCGTGGAGCGATCGAACGACTACGAGGTCC 235
consensus_1943#1      AGCCCCC----------------------------------------------------- 187
                      ******                                                      

consensus_1943#0      GTGCCTACGGCGCCCGCTCGAACGAGGACCTTGCCGAACGGGCGGTCCGCTACCTTGCCT 295
consensus_1943#1      ------------------------------------------------------------
                                                                                  

consensus_1943#0      CGCACACGCTCAAGTTCAGCGTTCCGTCCGAGGAGAACACCGTTGAAGAAGCTCGCAGCA 355
consensus_1943#1      ------------------------------------------------------------
                                                                                  

consensus_1943#0      GCCGCCTGAAGAAGATGCTGTTGCCTCTGCTGCTGGCAATGAAGCTGAAGATGGCCGTCG 415
consensus_1943#1      ------------------------------------------------------------
                                                                                  

consensus_1943#0      TGCTGCCCATCCTGTTGGCCATCGTTAAGTTCATCTCGCTGAAGGGCCTGATCGCCGGTC 475
consensus_1943#1      ------------------------------------------------------------
                                                                                  

consensus_1943#0      TGATGGCTCTCAAGTTCTCCATCTTCACCGTGCTGAACGGATCTGTTCCAGAAGAAGCAG 535
consensus_1943#1      ------------------------------------------------------------
                                                                                  

consensus_1943#0      GAGCGCGTGACCACCGCTTACATCACTAGCGCCCAG 571
consensus_1943#1      ------------------------------------