cluster # 1951

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Anopheles gambiae
cluster # 1951 cluster # 1951 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1951#0 length = 732 sequences # 1

consensus_1951#1 length = 719 sequences # 1

consensusID : consensus_1951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGATTATTCACCCGTCTGGCCCCAACCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACAGAATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNCCCATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTATCAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCATCAGTTCCTCAATCACAAGCAAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCATCTGCTCCCTGGTCTCAAGCATCACAAAAGAGGGTTCAGCANAAGGTTTCATNNCAAAAAGTNNGCNGGTCACCACGCCNCNCCACCCCCCCATCACCCCCCANNCCAGGGACNCNCANNAAACAAGGCANGCCCCACNCCAGCCNCCCNACAGCCANCCCACCNNCACCCNNGCCAAGGGGNACACNCATCCCAGCACCACCCANGCCAACGCAACACACGCACCCCCATCCCCACCCGCCACACACCCGCCAAANANGCCNCCCCNCGCNCACCATNCNNCCAACCCATCACACCAAGGAGGGGCCCGNCCCC]

[+] EMBL AL694871             [CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGATTATTCACCCGTCTGGCCCCAACCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACAGAATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNCCCATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTATCAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCATCAGTTCCTCAATCACAAGCAAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCATCTGCTCCCTGGTCTCAAGCATCACAAAAGAGGGTTCAGCANAAGGTTTCATNNCAAAAAGTNNGCNGGTCACCACGCCNCNCCACCCCCCCATCACCCCCCANNCCAGGGACNCNCANNAAACAAGGCANGCCCCACNCCAGCCNCCCNACAGCCANCCCACCNNCACCCNNGCCAAGGGGNACACNCATCCCAGCACCACCCANGCCAACGCAACACACGCACCCCCATCCCCACCCGCCACACACCCGCCAAANANGCCNCCCCNCGCNCACCATNCNNCCAACCCATCACACCAAGGAGGGGCCCGNCCCC]




>consensus_1951#0
CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGA
TTATTCACCCGTCTGGCCCCAACCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCT
ACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACAG
AATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNCC
CATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTAT
CAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCAT
CAGTTCCTCAATCACAAGCAAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCATCT
GCTCCCTGGTCTCAAGCATCACAAAAGAGGGTTCAGCANAAGGTTTCATNNCAAAAAGTN
NGCNGGTCACCACGCCNCNCCACCCCCCCATCACCCCCCANNCCAGGGACNCNCANNAAA
CAAGGCANGCCCCACNCCAGCCNCCCNACAGCCANCCCACCNNCACCCNNGCCAAGGGGN
ACACNCATCCCAGCACCACCCANGCCAACGCAACACACGCACCCCCATCCCCACCCGCCA
CACACCCGCCAAANANGCCNCCCCNCGCNCACCATNCNNCCAACCCATCACACCAAGGAG
GGGCCCGNCCCC

consensusID : consensus_1951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [GTGTTCCGGTTAGATAAAACTGTTCATCAATTGTAACTAACTGTGATTATTCACCCTCTGCCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTCGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAAAGAATGGTACTGCTGCAATGCGCAATATAATATCATCGTCGAGTGCTTTCCCATAATTCAGACAGATCATGGTTTACATCCCTTGCCCTTCACGTTAGTCATCTCTCGTTCGATTTTCGTCTCACAAACTGTATAGTTCTAGAAGAAACTCGTGTGCATTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTAAGTGCGTAAGAAATTTATTTTATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAATAGAAAGAGAAAGAGATAAAGAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGTGCACTCAACGCATTCGTTCGTCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATGCAGTTTTTGTTCGAAGCTACAAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTGGGCTGGCAGAGTAGTGCTTGCTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGCTTGTTTACATCAGANGCCTGTATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT]

[+] EMBL BX621483             [GTGTTCCGGTTAGATAAAACTGTTCATCAATTGTAACTAACTGTGATTATTCACCCTCTGCCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTCGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAAAGAATGGTACTGCTGCAATGCGCAATATAATATCATCGTCGAGTGCTTTCCCATAATTCAGACAGATCATGGTTTACATCCCTTGCCCTTCACGTTAGTCATCTCTCGTTCGATTTTCGTCTCACAAACTGTATAGTTCTAGAAGAAACTCGTGTGCATTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTAAGTGCGTAAGAAATTTATTTTATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAATAGAAAGAGAAAGAGATAAAGAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGTGCACTCAACGCATTCGTTCGTCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATGCAGTTTTTGTTCGAAGCTACAAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTGGGCTGGCAGAGTAGTGCTTGCTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGCTTGTTTACATCAGANGCCTGTATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT]




>consensus_1951#1
GTGTTCCGGTTAGATAAAACTGTTCATCAATTGTAACTAACTGTGATTATTCACCCTCTG
CCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCCTCGCGCCCGCAGTTA
TCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAAAGAATGGTACTGCTGCAA
TGCGCAATATAATATCATCGTCGAGTGCTTTCCCATAATTCAGACAGATCATGGTTTACA
TCCCTTGCCCTTCACGTTAGTCATCTCTCGTTCGATTTTCGTCTCACAAACTGTATAGTT
CTAGAAGAAACTCGTGTGCATTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTA
AGTGCGTAAGAAATTTATTTTATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAA
TAGAAAGAGAAAGAGATAAAGAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGT
GCACTCAACGCATTCGTTCGTCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATG
CAGTTTTTGTTCGAAGCTACAAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTG
GGCTGGCAGAGTAGTGCTTGCTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGC
TTGTTTACATCAGANGCCTGTATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1951#0      CGCGTTTATAACTGTGTTCCGGTTAGCTAAAACTGTTCATCATTNTGTAACTAACTGTGA 60
consensus_1951#1      -------------GTGTTCCGGTTAGATAAAACTGTTCATCAATT-GTAACTAACTGTGA 46
                                   ************* *************** *  **************

consensus_1951#0      TTATTCACCCGTCTGGCCCCAACCC-TCCTAACCCTAGTTGTGATAGATCCCATGTTCCC 119
consensus_1951#1      TTATTCACCC-TCTGCCCCCAACCCCTCCTAACCCTAGTTGTGATAGATCCCATGTTCCC 105
                      ********** **** ********* **********************************

consensus_1951#0      TACGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAACA 179
consensus_1951#1      T-CGCGCCCGCAGTTATCTAGTTGATGCTTGTTAGAAAATCCCAAACCCCCCTGCCAA-A 163
                      * ******************************************************** *

consensus_1951#0      GAATAGGTCACTAGCTAGCAATGCAGCCAATATAATATACATCGTACGCAGTAGCTATNC 239
consensus_1951#1      GAATGG--TACT-GCT-GCAATGCG--CAATATAATAT-CATCGT---CGAGTGCT-TTC 212
                      **** *   *** *** *******   *********** ******   *    *** * *

consensus_1951#0      CCATAAATATACAGACNAGATACATAGGTNATNNNACATACCCATNTGGCCCTTCACGTA 299
consensus_1951#1      CCATAA---TTCAGACA-GAT-CATGGTTTACATCCCTTGCCCTTCACGTTAGTCATCTC 267
                      ******   * *****  *** *** * * *     * * *** *   *    ***  * 

consensus_1951#0      TCAGTCATCNTCATCAGTTCCCGCACTATCTATCCAGTCTCCCACAAAAACNTAGCTGCA 359
consensus_1951#1      TCGTTCGATTT------TCGTCTCACAAACTGTATAGT-TCTAGAAGAAACTCGTGTGCA 320
                      **  **    *      *   * *** * ** *  *** **    * ****     ****

consensus_1951#0      TCAGTTCCTCAATCACAAGC--AAACACTCCCGNTAGGTTGCCACTTTCANACCCTCCCA 417
consensus_1951#1      TTAACTCATTGTCTGTTAGATAAAGGGTTAGAAGTTATTAAGTGCGTAAGAAATTTATTT 380
                      * *  ** *        **   **    *     *   *     * *    *   *    

consensus_1951#0      TCTGCTCCCTGGTCTCAAGCATCACAAA-AGAGGGTTCAGCANAAGGTTTCATNNCAAAA 476
consensus_1951#1      TATGAATAGAGAGCTAGAGAAAAAGAGAGAAAGAGGAAAATAGAAAGAGAAAGAGATAAA 440
                      * **      *  **  ** *  * * * * ** *   *  * ** *    *     ***

consensus_1951#0      AGTNNGCNGGTCACCACGCCNCNCCACCCCCCCAT------CACCCCCCANNCCAGGGAC 530
consensus_1951#1      GAAACGAAAGCAAAAATCTAGCTTTAGGGCACTATGTTGTGCACTCAACGCATTCGTTCG 500
                           *   *  *  *     *   *   * * **      *** *  *      *    

consensus_1951#0      NCNCANNAAACAAGGCANGCCCCACNCCAGCCNCCCNA--CAGCCANCCCACCNNCACCC 588
consensus_1951#1      TCTCTTGCTAGCGCTCGTGGTTCTTCCTAGATTTTGAATGCAGTTTTTGTTCGAAGCTAC 560
                       * *     *     *  *   *   * **       *  ***        *       *

consensus_1951#0      NNGCCAAGGGGNACACNCATCCCAGCACCACCCANGCCAACGC-AACACACGCACCCCCA 647
consensus_1951#1      AAATCGATTGTTATTCTTTTCTACGTGCTGCTTTCAATTGGGCTGGCAGAGTAGTGCTTG 620
                          * *  *  *  *   **   *  *  *          **   ** *      *   

consensus_1951#0      TCCCCACC---CGCCACACACCCGCCAAANANGCCNCCCCNCGCNCACC----ATNCNNC 700
consensus_1951#1      CTCGCACGAAATGCAGCATAGTATTAAGTAACTCAGGAGCTTGTTTACATCAGANGCCTG 680
                        * ***     **  ** *      *   *  *     *  *   **     *  *   

consensus_1951#0      CAACCCATCACACCAAGGAGGGGCCCGNCCCC------- 732
consensus_1951#1      TATGTTAGGATATTGAAATCGAAAGAAAACACGAAACAT 719
                       *    *  * *   *    *        * *