These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGCGTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAAGGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAGTGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAATGAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCTACAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAAGCAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCGCTGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAGAAAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT] [+] EMBL BM590552 [CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGCGTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAAGGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAGTGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAATGAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCTACAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAAGCAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCGCTGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAGAAAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT] consensusID : consensus_1962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [CAGNGAAGTGGATATGGCAGCGATAGCAGACGACATACAACTAATCGCTTGGACAGCTCTGCTTCGTACGTGTTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAGTGAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTAAAGTGCGATCGCAAATCACAAAAAAATGAGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTC] [+] EMBL AL932759 [CAGNGAAGTGGATATGGCAGCGATAGCAGACGACATACAACTAATCGCTTGGACAGCTCTGCTTCGTACGTGTTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAGTGAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTAAAGTGCGATCGCAAATCACAAAAAAATGAGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1962#0 CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGC 60 consensus_1962#1 -------------------------------------CAGNGAAGTGGAT--ATGGCAGC 21 * * ******* ******* consensus_1962#0 GTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAA 120 consensus_1962#1 GATAGC-AGACGACA--TACAA-CTA-ATCGCTTGGACAGCTCTGCT-TCGTACGTG--- 72 * **** ******** **** *** ******** *********** ********* consensus_1962#0 GGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAG 180 consensus_1962#1 -------------TTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAG 119 ************ ********* *********************** consensus_1962#0 TGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCA 240 consensus_1962#1 TGAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCA 179 ***** ****************************************************** consensus_1962#0 TTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAAT 300 consensus_1962#1 TTCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAAT 239 ********************************* ************************** consensus_1962#0 TGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAA- 359 consensus_1962#1 TGCATTAAAATCAATTCTTTTTTGTGTCACCT-AAAGTGCGATCGCAAATCACAAAAAAA 298 ******************************** ************************** consensus_1962#0 TGAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGA 419 consensus_1962#1 TGAGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGA 358 ******* **************************************************** consensus_1962#0 GATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCT 479 consensus_1962#1 GATTGATCCACGTTTC-------------------------------------------- 374 **************** consensus_1962#0 ACAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAA 539 consensus_1962#1 ------------------------------------------------------------ consensus_1962#0 GCAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCG 599 consensus_1962#1 ------------------------------------------------------------ consensus_1962#0 CTGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAG 659 consensus_1962#1 ------------------------------------------------------------ consensus_1962#0 AAAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT 712 consensus_1962#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||