cluster # 1970

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Anopheles gambiae
cluster # 1970 cluster # 1970 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1970#0 length = 691 sequences # 1

consensus_1970#1 length = 635 sequences # 1

consensusID : consensus_1970#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [AGAATCCCCCNCGGTTNTTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCTCGNCCTCGATCAACTGTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAGTGCGAACCCGTTCATGGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGCTCGTACAGCTGCCTGAAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGTACGGCACTGGACGGACGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTNCGGCGTCTACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAGATCTACAGAGTGAGGACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAATCGGTACAGCAAACGTGGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACATGACGACCGCGCATGAACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATGGNAAGACANGCGTGCATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAAGTATACGGGATCCCGTACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACTCTACTTGGCAAGGGAGTAGTAACCGACNGGC]

[+] EMBL AL694970             [AGAATCCCCCNCGGTTNTTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCTCGNCCTCGATCAACTGTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAGTGCGAACCCGTTCATGGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGCTCGTACAGCTGCCTGAAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGTACGGCACTGGACGGACGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTNCGGCGTCTACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAGATCTACAGAGTGAGGACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAATCGGTACAGCAAACGTGGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACATGACGACCGCGCATGAACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATGGNAAGACANGCGTGCATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAAGTATACGGGATCCCGTACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACTCTACTTGGCAAGGGAGTAGTAACCGACNGGC]




>consensus_1970#0
AGAATCCCCCNCGGTTNTTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCT
CGNCCTCGATCAACTGTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAG
TGCGAACCCGTTCATGGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGC
TCGTACAGCTGCCTGAAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGT
ACGGCACTGGACGGACGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTG
TACGGGTNCGGCGTCTACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAG
ATCTACAGAGTGAGGACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAAT
CGGTACAGCAAACGTGGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACA
TGACGACCGCGCATGAACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATG
GNAAGACANGCGTGCATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAA
GTATACGGGATCCCGTACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACT
CTACTTGGCAAGGGAGTAGTAACCGACNGGC

consensusID : consensus_1970#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGGTGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGGTGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCGACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACTGTACGGACGATCAGCTCGGCAGCGCGCTCGAGATCTGGGAGGAGGCGAACCCGTTCATGGACGTGGACGACCTGCGCGTGCTGGTCAACCAGACCAAGCGCTCGTACAGCTGCCTGAAGCTGCTCGTGTTCTGGCAGAACATGAGCGAGGGGTTCGTCGGCACGGCGGACGATTTCAAGCTGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTCTACATCCTGTCCAAGGCGAACGTCGTGTCGGTCGAGCTGAAGATCTACGAGGAGGACATCGAGATTAGCTCGGACGTTTTCGAGTTCCCGAACAGCTCGGTCAGCACCGTGCACGTGGCGGACCTGTTCTTCGAGGAGGTGATCATGACGCCGCGCATGAACTACCGC]

[+] EMBL BX616511             [CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGGTGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGGTGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCGACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACTGTACGGACGATCAGCTCGGCAGCGCGCTCGAGATCTGGGAGGAGGCGAACCCGTTCATGGACGTGGACGACCTGCGCGTGCTGGTCAACCAGACCAAGCGCTCGTACAGCTGCCTGAAGCTGCTCGTGTTCTGGCAGAACATGAGCGAGGGGTTCGTCGGCACGGCGGACGATTTCAAGCTGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTCTACATCCTGTCCAAGGCGAACGTCGTGTCGGTCGAGCTGAAGATCTACGAGGAGGACATCGAGATTAGCTCGGACGTTTTCGAGTTCCCGAACAGCTCGGTCAGCACCGTGCACGTGGCGGACCTGTTCTTCGAGGAGGTGATCATGACGCCGCGCATGAACTACCGC]




>consensus_1970#1
CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGG
TGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGG
TGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCG
ACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACT
GTACGGACGATCAGCTCGGCAGCGCGCTCGAGATCTGGGAGGAGGCGAACCCGTTCATGG
ACGTGGACGACCTGCGCGTGCTGGTCAACCAGACCAAGCGCTCGTACAGCTGCCTGAAGC
TGCTCGTGTTCTGGCAGAACATGAGCGAGGGGTTCGTCGGCACGGCGGACGATTTCAAGC
TGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTCTACATCCTGTCCA
AGGCGAACGTCGTGTCGGTCGAGCTGAAGATCTACGAGGAGGACATCGAGATTAGCTCGG
ACGTTTTCGAGTTCCCGAACAGCTCGGTCAGCACCGTGCACGTGGCGGACCTGTTCTTCG
AGGAGGTGATCATGACGCCGCGCATGAACTACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1970#0      ------------------------------------------------------------
consensus_1970#1      CGCAAAGGTATATGCTGCGGGAGCTGCACCACCAGATCGGCATGTTTCTGCAGGAGCAGG 60
                                                                                  

consensus_1970#0      ------------------------------------------------------------
consensus_1970#1      TGAAGCCGACGAGCGCGCTGTCGATCTTCAGCAGCAACCGGTACTACGGCTACCCGGAGG 120
                                                                                  

consensus_1970#0      --------------------------------------------AGAATCCCCCNCGGTT 16
consensus_1970#1      TGGACGACACCTGCCTGCGGCTAATCCAGAACAATCCACTCTACTACTTCAATCACGTCG 180
                                                                      **   * **   

consensus_1970#0      N-TTNNTCTGNATCGACCGGGACNCGCTGCNTNAGATCTTCGCCTCGNCCTCGATCAACT 75
consensus_1970#1      ACTTTGTCAGCATCGACCGGGAGTCGCTGCACAAGATCTTCGCCTCGCCCTCGATCAACT 240
                        **  ** * ***********  ******   ************** ************

consensus_1970#0      GTACGGACGATCAGCTCGGACAGCGCGCTCGAGATCTGGGAGGAGTGCGAACCCGTTCAT 135
consensus_1970#1      GTACGGACGATCAGCTCGG-CAGCGCGCTCGAGATCTGGGAGGAG-GCGAACCCGTTCAT 298
                      ******************* ************************* **************

consensus_1970#0      GGACGTGGACGACCTGCGCGATGCTGGTCAACCAGACCAAGCTGCTCGTACAGCTGCCTG 195
consensus_1970#1      GGACGTGGACGACCTGCGCG-TGCTGGTCAACCAGACCAAGC-GCTCGTACAGCTGCCTG 356
                      ******************** ********************* *****************

consensus_1970#0      AAGCTGCTCGTGTANCAGGGCAGAACATAGAGCGAGGGGTTACGTACGGCACTGGACGGA 255
consensus_1970#1      AAGCTGCTCGTGTTCT--GGCAGAACAT-GAGCGAGGGGTT-CGT-CGGCAC--GGCGGA 409
                      *************     ********** ************ *** ******  * ****

consensus_1970#0      CGATATNNCAAGCTGACTCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTNCGGCGTC 315
consensus_1970#1      CGA--TTTCAAGCTGACCCTGATGTCGGACAACCCGCTGTCGCTGTACGGGTTCGGCGTC 467
                      ***  *  ********* ********************************** *******

consensus_1970#0      TACATCCTGTCCAAGGCGAACGTACGTGTCGGTACGAGCTGAAAGATCTACAGAGTGAGG 375
consensus_1970#1      TACATCCTGTCCAAGGCGAACGT-CGTGTCGGT-CGAGCTGAA-GATCTACGAG--GAGG 522
                      *********************** ********* ********* *******     ****

consensus_1970#0      ACATCGAGATCAGTACGGACGTGTNCGAGTANCNCCGAANAGAATCGGTACAGCAAACGT 435
consensus_1970#1      ACATCGAGATTAGCTCGGACGTTTTCGAG--TTCCCGAACAGC-TCGGT-CAGCAC-CGT 577
                      ********** **  ******* * ****     ***** **  ***** *****  ***

consensus_1970#0      GGCACGTGTGCATGGAACCTGTNTCTATACGAGGAGAGTGATACATGACGACCGCGCATG 495
consensus_1970#1      G-CACGTG-GC---GGACCTGTTCTT---CGAGGAG-GTGAT-CATGACG-CCGCGCATG 626
                      * ****** **   * ******   *   ******* ***** ******* *********

consensus_1970#0      AACNTACCTGGANTACGCCGATCAACAGCCATACGACNCCAGATGGNAAGACANGCGTGC 555
consensus_1970#1      AACTACCGC--------------------------------------------------- 635
                      ***   *                                                     

consensus_1970#0      ATGATTGNCGCGANACCCCGAGATCTTACACGAAGACGANTACAAGTATACGGGATCCCG 615
consensus_1970#1      ------------------------------------------------------------
                                                                                  

consensus_1970#0      TACCATACCGCAACAGATACNGCAAAACGANACGGGTGGGCAACTCTACTTGGCAAGGGA 675
consensus_1970#1      ------------------------------------------------------------
                                                                                  

consensus_1970#0      GTAGTAACCGACNGGC 691
consensus_1970#1      ----------------