These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1114 fasta sequence [GATCCCCGCAGGTTAAACGAGGGGTACGTNTCCGCCCGTCGTGTCTGCTGNNTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGTGCAGGCGGACATACAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGTGGCAACTGGTACGGATACCGTTCAATGCAACCGGCATGGTGGGGTGTTTTGAGATACGGAACTATANANGATAAACCTAGCACTGGATTGCTGTCGCAGGATCAGNANGTACTGGACGTAACGGNACGGATGCTATACTATATCTACTATATACTACTTNTATACAGTACCATNTATGTAGATNNACTATCTTGCAGNGCATACGCCTTATCCAAAAATATAGCTATGCTACTTTCACACAGGTATATACTATGTAANCAGNTGGCTAAACTATACAACCGGGGCCGGCGACCGGATCAGCATACTACTATAACTACTATACCTATACCACAACCCGGACACCGTGGAAACAATACTNACCAACAAACAAACAACAACCAACAACTTGGCCAGCCTTGAAATTCGCAAGGAACAACAAACNACAGGGTTGGCGAAAAACACACCCCCCGGGGACAAGCCCCGTTACAGTNCACCGGCTCGTGTTGGAGGTCTGNTANACACTNAAAATTCAACAACACCGGGGTAGGTAAATATTGCGTGTGACCCGGTAGATTATAAGACACGCNGCTTCCGGAAGAGACAGACGGGAGAGATTAAAAACCTNAAACTAATANATGGCATACCACACGAACCAACAACCTATNCAACNCAAACACCACGACANAAACACCCCGCATTATGNANCAGAACACTATATTANCACCGCACNTTATTATACTCCAGACCNGGCTNTGNGTTTACGAGACGCCAACANCGGCGTANAATTAGCGNGGAACAATATAACCCGGGCCAGGACAAAAACATACGCCGGACAGAGGCTAACCGACACTTTTGGTTGGACAACAACTACAATTCATTAACAGNTGGNACCGCAAGNGCCACTAATNGCACTATNGTCNTTATCAGTACACGTACAAGCCGNAATACAACCGTGAGGAGGCACAATCGCCAC] [+] EMBL AL694973 [GATCCCCGCAGGTTAAACGAGGGGTACGTNTCCGCCCGTCGTGTCTGCTGNNTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGTGCAGGCGGACATACAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGTGGCAACTGGTACGGATACCGTTCAATGCAACCGGCATGGTGGGGTGTTTTGAGATACGGAACTATANANGATAAACCTAGCACTGGATTGCTGTCGCAGGATCAGNANGTACTGGACGTAACGGNACGGATGCTATACTATATCTACTATATACTACTTNTATACAGTACCATNTATGTAGATNNACTATCTTGCAGNGCATACGCCTTATCCAAAAATATAGCTATGCTACTTTCACACAGGTATATACTATGTAANCAGNTGGCTAAACTATACAACCGGGGCCGGCGACCGGATCAGCATACTACTATAACTACTATACCTATACCACAACCCGGACACCGTGGAAACAATACTNACCAACAAACAAACAACAACCAACAACTTGGCCAGCCTTGAAATTCGCAAGGAACAACAAACNACAGGGTTGGCGAAAAACACACCCCCCGGGGACAAGCCCCGTTACAGTNCACCGGCTCGTGTTGGAGGTCTGNTANACACTNAAAATTCAACAACACCGGGGTAGGTAAATATTGCGTGTGACCCGGTAGATTATAAGACACGCNGCTTCCGGAAGAGACAGACGGGAGAGATTAAAAACCTNAAACTAATANATGGCATACCACACGAACCAACAACCTATNCAACNCAAACACCACGACANAAACACCCCGCATTATGNANCAGAACACTATATTANCACCGCACNTTATTATACTCCAGACCNGGCTNTGNGTTTACGAGACGCCAACANCGGCGTANAATTAGCGNGGAACAATATAACCCGGGCCAGGACAAAAACATACGCCGGACAGAGGCTAACCGACACTTTTGGTTGGACAACAACTACAATTCATTAACAGNTGGNACCGCAAGNGCCACTAATNGCACTATNGTCNTTATCAGTACACGTACAAGCCGNAATACAACCGTGAGGAGGCACAATCGCCAC] consensusID : consensus_1971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence [GCTGGTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGGCAGGCGGACATCAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGGGCAACGGTACGGATCCGTTCAATGCAACCGGCATGGTGGTGTGTTTGAGATCGGACTTTTGATTCCTAGCACTGGATGCTGTCGCAGGATCAGTTTGTTCTGGACGTAACGGTCGGTTGCTATCTTTCTCTTTCTCTTTTCAGTCCATTTATGTAGATTCTTCTGCAGCGATCGCTTTCAAAAATTGCTTGCTCTTCCACGTTCCTTGTTCAGTGCTACTTCAACCGCGCCGCGCCGTGCGATCTCTTTCTCTTCCTTTCACACCCGGTCCCGGACACTCTCACACACACACACACTGCGCTGATGAGACAAACAGCTGCAAACCCCCCGGCAGCCCGTCGTCCGCGGTGGCGTTACTAATCACACCCGGTGTTTTTGCTTCCGTTTTAGCCGCTTCGGCGACGGAATAACCTACTTTTGCTCAAACACACTCTCACACACACACACACAAAACCGATTGAAAATTTTACACACTTTTTCACCGGCTGCCTCTCGCAACGGTAATGCGGTAATTTCTGTATTTCCGTAGAGCAAATTGCACACGCGTGTACACCCGGCTGCTGCTGCTGCTGCTGTTGTTGCGACCGACCGGACGCGTGGGCGG] [-] EMBL BM641396 [GCTGGTGATGTTTGTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGGCAGGCGGACATCAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGGGCAACGGTACGGATCCGTTCAATGCAACCGGCATGGTGGTGTGTTTGAGATCGGACTTTTGATTCCTAGCACTGGATGCTGTCGCAGGATCAGTTTGTTCTGGACGTAACGGTCGGTTGCTATCTTTCTCTTTCTCTTTTCAGTCCATTTATGTAGATTCTTCTGCAGCGATCGCTTTCAAAAATTGCTTGCTCTTCCACGTTCCTTGTTCAGTGCTACTTCAACCGCGCCGCGCCGTGCGATCTCTTTCTCTTCCTTTCACACCCGGTCCCGGACACTCTCACACACACACACACTGCGCTGATGAGACAAACAGCTGCAAACCCCCCGGCAGCCCGTCGTCCGCGGTGGCGTTACTAATCACACCCGGTGTTTTTGCTTCCGTTTTAGCCGCTTCGGCGACGGAATAACCTACTTTTGCTCAAACACACTCTCACACACACACACACAAAACCGATTGAAAATTTTACACACTTTTTCACCGGCTGCCTCTCGCAACGGTAATGCGGTAATTTCTGTATTTCCGTAGAGCAAATTGCACACGCGTGTACACCCGGCTGCTGCTGCTGCTGCTGTTGTTGCGACCGACCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1971#0 GATCCCCGCAGGTTAAACGAGGGGTACGTNTCCGCCCGTCGTGTCTGCTGNNTGATGTTT 60 consensus_1971#1 ----------------------------------------------GCTGGT-GATGTTT 13 **** ******* consensus_1971#0 GTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAGTGCAGGCGGA 120 consensus_1971#1 GTGTGTTGCCTCCAGTTTGGATCACTGGTCATGGCCAGTGCGTAGTAGAG-GCAGGCGGA 72 ************************************************** ********* consensus_1971#0 CATACAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAGTGGCAACTGGTACGGATAC 180 consensus_1971#1 CAT-CAGCAGTACCGTGACGCTGGTGTAAACCCGCACCGAG-GGCAAC-GGTACGGAT-C 128 *** ************************************* ****** ********* * consensus_1971#0 CGTTCAATGCAACCGGCATGGTGGGGTGTTTTGAGATACGGAACTATANANGATAAACCT 240 consensus_1971#1 CGTTCAATGCAACCGGCATGGTGGTGTGTTT-GAGAT-CGGACTTTTGATT------CCT 180 ************************ ****** ***** **** * * *** consensus_1971#0 AGCACTGGATTGCTGTCGCAGGATCAGNANGTACTGGACGTAACGGNACGGATGCTATAC 300 consensus_1971#1 AGCACTGGAT-GCTGTCGCAGGATCAGTTTGTTCTGGACGTAACGGT-CGGTTGCTATCT 238 ********** **************** ** ************* *** ****** consensus_1971#0 TATATCTACTATATACTACTTNTATACAGTACCATNTATGTAGATNNACTATCTTGCAGN 360 consensus_1971#1 T---TCT--------CTTTCTCTTTTCAGT-CCATTTATGTAGATTC----TTCTGCAGC 282 * *** ** * * * **** **** ********* * ***** consensus_1971#0 GCATACGCCTTATCCAAAAATATAGCTATGCTACTTTCACACAGGTATATACTATGTAAN 420 consensus_1971#1 G-AT-CGCTTT---CAAAAATT--GCT-TGCT-CTTCCAC--------GTTCCTTGT--T 323 * ** *** ** ******* *** **** *** *** * * *** consensus_1971#0 CAGNTGGCTAAACTATACAACCGGGGCCGGCGACCGGATCAGCATACTACTATAACTACT 480 consensus_1971#1 CAGT--GCTA----CTTCAACCGCGCCGCGCCGTGCGATC----TCTTTCTCTTCCTTTC 373 *** **** * ****** * * ** **** * * ** * ** consensus_1971#0 ATACCTATACCACAACCCGGACACCGTGGAAACAATACTNACCAACAAACAAACAACAAC 540 consensus_1971#1 ACACCCG------GTCCCGGACACT------------CTCACACACACACACACTGCG-C 414 * *** ********* ** ** *** *** ** * * consensus_1971#0 CAACAACTTGGCCAGCCTTGAAATTCGCAAGGAACAACAAACNACAGGGTTGGCGAAAAA 600 consensus_1971#1 TGATGAGACAAACAGCTGCAAACCCCCCGGCAGCCCGTCGTCCGCGGTGGCGTTACTAAT 474 * * **** ** * * * * * * * * ** consensus_1971#0 CACACCCCCCGGGGACAAGCCCCGTTACAGTNCACCGGCTCGTGTTGGAGGTCTGNTANA 660 consensus_1971#1 CACACCCGGTGTTTTTGCTTCCGTTTTAGCCGCTTCGG--CGACGGAATAACCTACTTTT 532 ******* * ** ** * *** ** ** * consensus_1971#0 CACTNAAAATTCAACAACACCGGGGTAGGTAAATATTGCGTGTGACCCGGTAGATTATAA 720 consensus_1971#1 GCTCAAACACACTCTCACACACACACACACAAAACCGATTGAAAATTTTACACACTTTTT 592 ** * * **** * *** * * * * * consensus_1971#0 GACACGCNGCTTCCGGAAGAGACAGACGGGAGAGATTAAAAACCTNAAACTAATANATGG 780 consensus_1971#1 CACCGGCTGCCTCTCGCAACGGTA-ATGCGGTAATTTCTGTATTTCCGTAGAGCAAATTG 651 ** ** ** ** * * * * * * * * ** * * * * ** * consensus_1971#0 CATACCACACGAACCAACAACCTATNCAACNCAAACACCACGACANAAACACCCCGCATT 840 consensus_1971#1 CACAC-GCGTGTACACCCGGCTGCTGCTGCT--GCTGCTGTTGTTGCGACCGACCGGACG 708 ** ** * * ** * * * * * * ** *** * consensus_1971#0 ATGNANCAGAACACTATATTANCACCGCACNTTATTATACTCCAGACCNGGCTNTGNGTT 900 consensus_1971#1 CGTGGGCGG--------------------------------------------------- 717 * * consensus_1971#0 TACGAGACGCCAACANCGGCGTANAATTAGCGNGGAACAATATAACCCGGGCCAGGACAA 960 consensus_1971#1 ------------------------------------------------------------ consensus_1971#0 AAACATACGCCGGACAGAGGCTAACCGACACTTTTGGTTGGACAACAACTACAATTCATT 1020 consensus_1971#1 ------------------------------------------------------------ consensus_1971#0 AACAGNTGGNACCGCAAGNGCCACTAATNGCACTATNGTCNTTATCAGTACACGTACAAG 1080 consensus_1971#1 ------------------------------------------------------------ consensus_1971#0 CCGNAATACAACCGTGAGGAGGCACAATCGCCAC 1114 consensus_1971#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||