cluster # 1972

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Anopheles gambiae
cluster # 1972 cluster # 1972 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1972#0 length = 683 sequences # 1

consensus_1972#1 length = 558 sequences # 1

consensusID : consensus_1972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [AATNCCCCGAGTTAGACTCAGCTTCCGCCGCAACAACTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTGTCAAGTCGACGGCGCTGGAATTCCAATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAGGACAAGAAGGCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCTGCTGATACTGAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACTGCTAGCTTTAANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGGTATCTTGAAGCTGTCAAACCAAA]

[+] EMBL AL694980             [AATNCCCCGAGTTAGACTCAGCTTCCGCCGCAACAACTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTGTCAAGTCGACGGCGCTGGAATTCCAATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAGGACAAGAAGGCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCTGCTGATACTGAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACTGCTAGCTTTAANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGGTATCTTGAAGCTGTCAAACCAAA]




>consensus_1972#0
AATNCCCCGAGTTAGACTCAGCTTCCGCCGCAACAACTGCAGTCGGCGAAGAGCGGCGAC
AGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATC
TGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGG
CCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTA
GGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTG
TGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGC
GACTGGAGCGTTTGTCAAGTCGACGGCGCTGGAATTCCAATCCCCGACGACATCACCGAG
GAAGGACGGTACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAG
GACAAGAAGGCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCT
GCTGATACTGAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACT
GCTAGCTTTAANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGG
TATCTTGAAGCTGTCAAACCAAA

consensusID : consensus_1972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTGACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGTGGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATC]

[+] EMBL BM620512             [GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTGACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGTGGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATC]




>consensus_1972#1
GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTG
ACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGT
GGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAAC
CTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACG
AACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACG
TTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGG
CTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCG
AGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGT
TTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGG
TACTCTGCGCGCTTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1972#0      ------------------------------------------------------------
consensus_1972#1      GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTG 60
                                                                                  

consensus_1972#0      -----------------------------------------------AATNCCCCGAGTT 13
consensus_1972#1      ACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGT 120
                                                                           *   * *

consensus_1972#0      AGAC-TCAGCTTCCGCCGCAACAAC-TGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAAC 71
consensus_1972#1      GGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAAC 180
                       *** ******************** **********************************

consensus_1972#0      CTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACG 131
consensus_1972#1      CTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACG 240
                      ************************************************************

consensus_1972#0      AACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACG 191
consensus_1972#1      AACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACG 300
                      ************************************************************

consensus_1972#0      TTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGG 251
consensus_1972#1      TTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGG 360
                      ************************************************************

consensus_1972#0      CTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCG 311
consensus_1972#1      CTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCG 420
                      ************************************************************

consensus_1972#0      AGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGT 371
consensus_1972#1      AGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGT 480
                      ************************************************************

consensus_1972#0      TT-GTCAAGTCGACGGCGCTGGAATTCCA-ATCCCCGACGACATCACCGAGGAAGGACGG 429
consensus_1972#1      TTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGG 540
                      ** ************************** ******************************

consensus_1972#0      TACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAGGACAAGAAG 489
consensus_1972#1      TACTCTGCGCGCTTCATC------------------------------------------ 558
                      ******************                                          

consensus_1972#0      GCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCTGCTGATACT 549
consensus_1972#1      ------------------------------------------------------------
                                                                                  

consensus_1972#0      GAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACTGCTAGCTTT 609
consensus_1972#1      ------------------------------------------------------------
                                                                                  

consensus_1972#0      AANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGGTATCTTGAA 669
consensus_1972#1      ------------------------------------------------------------
                                                                                  

consensus_1972#0      GCTGTCAAACCAAA 683
consensus_1972#1      --------------