cluster # 1983

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Anopheles gambiae
cluster # 1983 cluster # 1983 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1983#0 length = 777 sequences # 1

consensus_1983#1 length = 560 sequences # 1

consensusID : consensus_1983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 777
fasta sequence

                              [ACGAGAACAGAGCGTACATCGATCCTAAGGAAAGAGGCTCACGACAATGAGCGTACCGGAATGCCATGACAATAAAGTAAAGCAGAGAAACAAATCAAAAACCGAGTGTTCAGTCAACTAGGTATCAAATGGGTATAAAATGCCTAGTGAAATAGAGTTGAAGAAAAAAAAAACAAACAAACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCTCGTTTTTTGATGTGAAAAGCAAAAATCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTTCTCAGTAGTAGGGTTTAGCCAATCGCAATAGCTTTCTTTCGCTATAAGACCCATTTCAAATCCCTAAAGCTCGAAACGTCCCATTTTAAACGTATCGGAATGAGCCACAAAATAAGGTTAAAAAAGTTTGTAAACCGTTGTAACTGTATTTACAATTCGTGCTAAACGTTTCGAAGCAAACGATATCGAGTACACCAGGACAGTGTCATAGCAATTTTTGATTTAAAAAACAATGGGCTTTGCTTACTTATATAAACACCGCAAAAGCGTTTGCCGCTCAGCCAAATCGGGATATGGGACGAACATTTAAAGAGGTGTTTTACGCTGTTTATACCATTAAACCAACGCAACACAAGCAACAGTGGGCATGTGACTTAGGGAGGGTTTTTTTTTGTTTTTCGTTAGATTAAACAGATTTACTCGTACTTACAGCAATTAAGTACCGAAAACGACTGCTTAGGTACAAGTGGTTTTGATGCAT]

[+] EMBL BX612650             [ACGAGAACAGAGCGTACATCGATCCTAAGGAAAGAGGCTCACGACAATGAGCGTACCGGAATGCCATGACAATAAAGTAAAGCAGAGAAACAAATCAAAAACCGAGTGTTCAGTCAACTAGGTATCAAATGGGTATAAAATGCCTAGTGAAATAGAGTTGAAGAAAAAAAAAACAAACAAACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCTCGTTTTTTGATGTGAAAAGCAAAAATCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTTCTCAGTAGTAGGGTTTAGCCAATCGCAATAGCTTTCTTTCGCTATAAGACCCATTTCAAATCCCTAAAGCTCGAAACGTCCCATTTTAAACGTATCGGAATGAGCCACAAAATAAGGTTAAAAAAGTTTGTAAACCGTTGTAACTGTATTTACAATTCGTGCTAAACGTTTCGAAGCAAACGATATCGAGTACACCAGGACAGTGTCATAGCAATTTTTGATTTAAAAAACAATGGGCTTTGCTTACTTATATAAACACCGCAAAAGCGTTTGCCGCTCAGCCAAATCGGGATATGGGACGAACATTTAAAGAGGTGTTTTACGCTGTTTATACCATTAAACCAACGCAACACAAGCAACAGTGGGCATGTGACTTAGGGAGGGTTTTTTTTTGTTTTTCGTTAGATTAAACAGATTTACTCGTACTTACAGCAATTAAGTACCGAAAACGACTGCTTAGGTACAAGTGGTTTTGATGCAT]




>consensus_1983#0
ACGAGAACAGAGCGTACATCGATCCTAAGGAAAGAGGCTCACGACAATGAGCGTACCGGA
ATGCCATGACAATAAAGTAAAGCAGAGAAACAAATCAAAAACCGAGTGTTCAGTCAACTA
GGTATCAAATGGGTATAAAATGCCTAGTGAAATAGAGTTGAAGAAAAAAAAAACAAACAA
ACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCTCGTTTTT
TGATGTGAAAAGCAAAAATCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTTCTCA
GTAGTAGGGTTTAGCCAATCGCAATAGCTTTCTTTCGCTATAAGACCCATTTCAAATCCC
TAAAGCTCGAAACGTCCCATTTTAAACGTATCGGAATGAGCCACAAAATAAGGTTAAAAA
AGTTTGTAAACCGTTGTAACTGTATTTACAATTCGTGCTAAACGTTTCGAAGCAAACGAT
ATCGAGTACACCAGGACAGTGTCATAGCAATTTTTGATTTAAAAAACAATGGGCTTTGCT
TACTTATATAAACACCGCAAAAGCGTTTGCCGCTCAGCCAAATCGGGATATGGGACGAAC
ATTTAAAGAGGTGTTTTACGCTGTTTATACCATTAAACCAACGCAACACAAGCAACAGTG
GGCATGTGACTTAGGGAGGGTTTTTTTTTGTTTTTCGTTAGATTAAACAGATTTACTCGT
ACTTACAGCAATTAAGTACCGAAAACGACTGCTTAGGTACAAGTGGTTTTGATGCAT

consensusID : consensus_1983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [GCAGATCGCACGAGGTGTAATGCCTAGGTGAAATAGAGTTGACGAAAAAAAAAACAAACAAACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCGTCGTTTTTTGATGTGAAAAGCAANAAAGTCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTTCTCAGNTAGTAGGGTTTAGCCAATCGCAATAGCGTTTCTTTCGCGTATAAGACCCAGTTTCAAAGTCCCGTAAAGCGTCGAAACGTCCCAGTTTTAAACGTATCGGAAGTGAGCCACAAAATAAGGTTAAAAAAGTTTGTAANACCGTTTGNTAACTGGTAGTTGTNCAAGTTCGGTGCTAAACGGTTTCGAAGGCAAAACGANTAATCGGAGGTACACCAGGGACAGGTGGTCACTAGGCAAGTTTGTGTGANTCTTAGAAANNACAATGGGGCTTTGCGTTACTTATAGTAAACGACCGGCGAAGAAGCGTTATGCCGCTCAGCCANAATCGGGGAGTATGGGCACGAACATGTTACNAGGAGGTGATTTTACGGCCT]

[+] EMBL BX469607             [GCAGATCGCACGAGGTGTAATGCCTAGGTGAAATAGAGTTGACGAAAAAAAAAACAAACAAACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCGTCGTTTTTTGATGTGAAAAGCAANAAAGTCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTTCTCAGNTAGTAGGGTTTAGCCAATCGCAATAGCGTTTCTTTCGCGTATAAGACCCAGTTTCAAAGTCCCGTAAAGCGTCGAAACGTCCCAGTTTTAAACGTATCGGAAGTGAGCCACAAAATAAGGTTAAAAAAGTTTGTAANACCGTTTGNTAACTGGTAGTTGTNCAAGTTCGGTGCTAAACGGTTTCGAAGGCAAAACGANTAATCGGAGGTACACCAGGGACAGGTGGTCACTAGGCAAGTTTGTGTGANTCTTAGAAANNACAATGGGGCTTTGCGTTACTTATAGTAAACGACCGGCGAAGAAGCGTTATGCCGCTCAGCCANAATCGGGGAGTATGGGCACGAACATGTTACNAGGAGGTGATTTTACGGCCT]




>consensus_1983#1
GCAGATCGCACGAGGTGTAATGCCTAGGTGAAATAGAGTTGACGAAAAAAAAAACAAACA
AACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCGTCGTTT
TTTGATGTGAAAAGCAANAAAGTCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTT
CTCAGNTAGTAGGGTTTAGCCAATCGCAATAGCGTTTCTTTCGCGTATAAGACCCAGTTT
CAAAGTCCCGTAAAGCGTCGAAACGTCCCAGTTTTAAACGTATCGGAAGTGAGCCACAAA
ATAAGGTTAAAAAAGTTTGTAANACCGTTTGNTAACTGGTAGTTGTNCAAGTTCGGTGCT
AAACGGTTTCGAAGGCAAAACGANTAATCGGAGGTACACCAGGGACAGGTGGTCACTAGG
CAAGTTTGTGTGANTCTTAGAAANNACAATGGGGCTTTGCGTTACTTATAGTAAACGACC
GGCGAAGAAGCGTTATGCCGCTCAGCCANAATCGGGGAGTATGGGCACGAACATGTTACN
AGGAGGTGATTTTACGGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1983#0      ACGAGAACAGAGCGTACATCGATCCTAAGGAAAGAGGCTCACGACAATGAGCGTACCGGA 60
consensus_1983#1      ------------------------------------------------------------
                                                                                  

consensus_1983#0      ATGCCATGACAATAAAGTAAAGCAGAGAAACAAATCAAAAACCGAGTGTTCAGTCAACTA 120
consensus_1983#1      -----------------------------------------------------------G 1
                                                                                  

consensus_1983#0      GGTATCAAATGGGTATAAAATGCCTAG-TGAAATAGAGTTGAAGAAAAAAAAAACAAACA 179
consensus_1983#1      CAGATCGCACGAG-GTGTAATGCCTAGGTGAAATAGAGTTGACGAAAAAAAAAACAAACA 60
                         ***  * * *  *  ********* ************** *****************

consensus_1983#0      AACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGC-TCGTTT 238
consensus_1983#1      AACGGATGGTATAACTAGCAAACTAAAGTAAAGCTTAGCTACTGATGTATCGCGTCGTTT 120
                      ***************************************************** ******

consensus_1983#0      TTTGATGTGAAAAGCAAAAA--TCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTT 296
consensus_1983#1      TTTGATGTGAAAAGCAANAAAGTCTACAAGAGCCTCCCAAATACGAGAAAACATTGCGTT 180
                      ***************** **  **************************************

consensus_1983#0      CTCAGT-AGTAGGGTTTAGCCAATCGCAATAGC-TTTCTTTCGC-TATAAGACCCA-TTT 352
consensus_1983#1      CTCAGNTAGTAGGGTTTAGCCAATCGCAATAGCGTTTCTTTCGCGTATAAGACCCAGTTT 240
                      *****  ************************** ********** *********** ***

consensus_1983#0      CAAATCCC--TAAAGC-TCGAAACGTCCCA-TTTTAAACGTATCGGAA-TGAGCCACAAA 407
consensus_1983#1      CAAAGTCCCGTAAAGCGTCGAAACGTCCCAGTTTTAAACGTATCGGAAGTGAGCCACAAA 300
                      ****  **  ****** ************* ***************** ***********

consensus_1983#0      ATAAGGTTAAAAAAGTTTGTAAA-CCGTT--GTAACTG-----TATTTACAATTCGTGCT 459
consensus_1983#1      ATAAGGTTAAAAAAGTTTGTAANACCGTTTGNTAACTGGTAGTTGTNCAAGTTCGGTGCT 360
                      **********************  *****   ******     * *  *   *  *****

consensus_1983#0      AAACG-TTTCGAAGC--AAACGAT--ATCGA--GTACACCAGG-ACAGT--GTCAT--AG 507
consensus_1983#1      AAACGGTTTCGAAGGCAAAACGANTAATCGGAGGTACACCAGGGACAGGTGGTCACTAGG 420
                      ***** ********   ******   ****   ********** ****   ****    *

consensus_1983#0      CAATTTT---TGATTT----AAAAAACAATGGG-CTTTGC-TTACTTATA-TAAACACC- 556
consensus_1983#1      CAAGTTTGTGTGANTCTTAGAAANNACAATGGGGCTTTGCGTTACTTATAGTAAACGACC 480
                      *** ***   *** *     ***  ******** ****** ********* *****  * 

consensus_1983#0      ---GCAAAAGCGTT-TGCCGCTCAGCCAAA-TCGGGA--TATGGG-ACGAACATTT---A 605
consensus_1983#1      GGCGAAGAAGCGTTATGCCGCTCAGCCANAATCGGGGAGTATGGGCACGAACATGTTACN 540
                         * * ******* ************* * *****   ****** ******** *    

consensus_1983#0      AAGAGGTG-TTTTACGCTGTTTATACCATTAAACCAACGCAACACAAGCAACAGTGGGCA 664
consensus_1983#1      AGGAGGTGATTTTACGGCCT---------------------------------------- 560
                      * ****** *******   *                                        

consensus_1983#0      TGTGACTTAGGGAGGGTTTTTTTTTGTTTTTCGTTAGATTAAACAGATTTACTCGTACTT 724
consensus_1983#1      ------------------------------------------------------------
                                                                                  

consensus_1983#0      ACAGCAATTAAGTACCGAAAACGACTGCTTAGGTACAAGTGGTTTTGATGCAT 777
consensus_1983#1      -----------------------------------------------------