cluster # 1987

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Anopheles gambiae
cluster # 1987 cluster # 1987 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1987#0 length = 637 sequences # 1

consensus_1987#1 length = 580 sequences # 1

consensusID : consensus_1987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGACGACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAAAAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTGCGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGCCGAGCGCGACTATCACTGCAGCATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGGGTTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGAGAAGCGGGCCAAAGCGACGGAGGGCCTGCAGCAGAAACCCCCCTCGCTGCCCAAGTGTGCGTACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGCTGCAAGCACTGCCGCAAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA]

[+] EMBL BX607786             [ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGACGACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAAAAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTGCGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGCCGAGCGCGACTATCACTGCAGCATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGGGTTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGAGAAGCGGGCCAAAGCGACGGAGGGCCTGCAGCAGAAACCCCCCTCGCTGCCCAAGTGTGCGTACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGCTGCAAGCACTGCCGCAAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA]




>consensus_1987#0
ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGAC
GACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAA
AAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTG
CGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGCCGAGCGCGACTATCACTGCAGC
ATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGGG
TTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGAG
AAGCGGGCCAAAGCGACGGAGGGCCTGCAGCAGAAACCCCCCTCGCTGCCCAAGTGTGCG
TACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGCTGCAAGCACTGCCGC
AAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGT
GGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCAC
ATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA

consensusID : consensus_1987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCAAGTACGAATCGGAATCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTGGGGCGGAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGGCCGGAGCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGGTGGACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAACCGGTAACGCCGGTACCGCGGGTCCGCAATACACGGTCGTCCCGGGCAGCAATGGCGATGCAGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAGCAAGCAGCAGAAGGCGAATTGAAGAAGGAACAAACCGAAGCGAAGGAAAACGAAAACAATGT]

[+] EMBL AL695062             [TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCAAGTACGAATCGGAATCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTGGGGCGGAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGGCCGGAGCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGGTGGACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAACCGGTAACGCCGGTACCGCGGGTCCGCAATACACGGTCGTCCCGGGCAGCAATGGCGATGCAGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAGCAAGCAGCAGAAGGCGAATTGAAGAAGGAACAAACCGAAGCGAAGGAAAACGAAAACAATGT]




>consensus_1987#1
TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGAAGCAGGTGCTGTTCCGGGCGTGCG
GCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGA
CCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCAAGTACGAAT
CGGAATCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTG
GGGCGGAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGGCCG
GAGCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGG
TGGACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAAC
CGGTAACGCCGGTACCGCGGGTCCGCAATACACGGTCGTCCCGGGCAGCAATGGCGATGC
AGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAGCAAGCAGCAGAAGGCGAATTGA
AGAAGGAACAAACCGAAGCGAAGGAAAACGAAAACAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1987#0      ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGAC 60
consensus_1987#1      -----------TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGA--AGCAG-GTGCT 46
                                  * **** *         * *** *  ***    **   **** * *  

consensus_1987#0      GACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAA 120
consensus_1987#1      GTTCCG----GGCGTGC-GGCATCGAGAAGA-----GTGGCGTGGTGTGCCA----GGAA 92
                      *  ***     **  ** ****** * * *      * ****  * *   **    ****

consensus_1987#0      AAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTG 180
consensus_1987#1      CCGCTGGCCGGCCTGT------------TCGAGAACGTGACCTGCCCGCTGCACATGGAG 140
                        **** ** *****             ***** *  *   * *** ** **** **  *

consensus_1987#0      CGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGC-CGAGCGCGACTATCACTGCAG 239
consensus_1987#1      C-----TGCCGGCGCAGCGATC-----GTTCAACAAGCGCAAGTACGA-----ATCGGAA 185
                      *      ********* * ***     ** ** *  ** * **  ***     *  * * 

consensus_1987#0      CATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGG 299
consensus_1987#1      TCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTGGGGCG 245
                             **   **  * *    **    *    **   *  **    *  ****  * *

consensus_1987#0      GTTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGA 359
consensus_1987#1      GAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGG---CCGGA 302
                      *   ** *     *    *  **    *       ** * ** *******     * ***

consensus_1987#0      GAAGCGG--GCCAAAGCGACGGAGGGCCTGCAGC-AGAAACCCCCCTCGCTGCCCAAGTG 416
consensus_1987#1      GCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGGTG 362
                      *   ***  * ***   * ***      ** *** * *  *       * ** *   ***

consensus_1987#0      TGCGT--ACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGC-TGCAAGCA 473
consensus_1987#1      GACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAACCG 422
                        **   *  *   **    **** *   *    ******   **  *     * ** * 

consensus_1987#0      CTGCCGCAAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGA 533
consensus_1987#1      GTAACGCCGGTACCGC---GGGTCCGCAATACACG-GTCGTCCCGGGCA-GCAATGGCGA 477
                       *  ***  * **  *   * *  *   *  ** * *  ** ******  **     ***

consensus_1987#0      -GAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCC 592
consensus_1987#1      TGCAGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAG--CAAGCA-GCAGAAGGCG 534
                       * **   *  *    *    ** ****     ***  * *  * ** * *      ** 

consensus_1987#0      CGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA---- 637
consensus_1987#1      AATTGAAGAAGGAACAAAC--CGAAGCGAAGGAA-AACGAAAACAATGT 580
                         ** * * *** *   *  ** *****  *   *** *   **