These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [GAGGNTGAACATGCTGTNTTTATTCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNGATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAACTCGTCAACTCTTTCTGCTACTTAACACCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCGTTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAGNCTATATNGGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTGGCCCAAGTATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTACATTCGCTCACTCTTGATTGGCCAACAGGAGCGAATAAAAGCATTCGCCACAAGGTATCTAGACACTCATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGTGGNGGGAACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGATGCACGGACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGCTATGNAAAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTTGGAGTCGCAAGTGATGNGGA] [+] EMBL AL933200 [GAGGNTGAACATGCTGTNTTTATTCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNGATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAACTCGTCAACTCTTTCTGCTACTTAACACCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCGTTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAGNCTATATNGGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTGGCCCAAGTATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTACATTCGCTCACTCTTGATTGGCCAACAGGAGCGAATAAAAGCATTCGCCACAAGGTATCTAGACACTCATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGTGGNGGGAACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGATGCACGGACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGCTATGNAAAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTTGGAGTCGCAAGTGATGNGGA] consensusID : consensus_1997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTACATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTGTTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAAGAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAATCGTCAACTCTTTCTGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCTTAATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTTGCTTAGCTTTGGCGCAACTTGGTTGCATTCCCTAGTAGTTCCCGATGCCAGTTTGTTTGTTTTATTTAGTTTTTTTTTTTGCAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTTAAATGTATACGCAATCCTTTGGACACCCGAACGCGTGGGCGG] [-] EMBL BM585714 [TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTACATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTGTTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAAGAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAATCGTCAACTCTTTCTGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCTTAATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTTGCTTAGCTTTGGCGCAACTTGGTTGCATTCCCTAGTAGTTCCCGATGCCAGTTTGTTTGTTTTATTTAGTTTTTTTTTTTGCAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTTAAATGTATACGCAATCCTTTGGACACCCGAACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1997#0 ------------------------------------------------------------ consensus_1997#1 TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTAC 60 consensus_1997#0 ------------------------------------------------------------ consensus_1997#1 ATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTG 120 consensus_1997#0 --------------------------------GAGGNTGAACATGCTGTNTTTAT----- 23 consensus_1997#1 TTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAA 180 * *** consensus_1997#0 ------TCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNG-ATTATTATTAACGTTAC 76 consensus_1997#1 GAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTAC 240 ** * * ****************** ******* ***************** consensus_1997#0 GCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATT 136 consensus_1997#1 GCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATT 300 ************************************************************ consensus_1997#0 AAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAACTCGTCAACTCTTT 196 consensus_1997#1 AAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAA-TCGTCAACTCTTT 359 ********************************************** ************* consensus_1997#0 CTGCTACTTAACAC--------CCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCG 248 consensus_1997#1 CTGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATC- 418 ************ ************************************* consensus_1997#0 TTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAGNCTATATN 308 consensus_1997#1 TTAATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTT----------GCTTAGCTT 468 ******************************** ****** * * ** * consensus_1997#0 GGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTGGCCCAAGT 368 consensus_1997#1 TGGC--GCAACTTGG--TTGCATTCCC---TAGTAGTTCCCGATGCCAGTTTGTTTGT-- 519 ** ********* *** *** ** ****** * *** ** * consensus_1997#0 ATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTACATTCGCTC 428 consensus_1997#1 -TTTATTTAGTTTTTTTTTTTGCAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTT 578 ** * ** * * * ** ** * * * *** * * ** ** consensus_1997#0 ACTCTTGATTGGCCAACAG--GAGCGAATAAAAGCATTCGCCACAAGGTATCTAGACACT 486 consensus_1997#1 AAATGT-ATACGCAATCCTTTGGACACCCGAACGCGTGGGCGG----------------- 620 * * ** ** * * * * ** ** * ** consensus_1997#0 CATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGTGGNGGG 546 consensus_1997#1 ------------------------------------------------------------ consensus_1997#0 AACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGATGCACG 606 consensus_1997#1 ------------------------------------------------------------ consensus_1997#0 GACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGCTATGNA 666 consensus_1997#1 ------------------------------------------------------------ consensus_1997#0 AAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTTGGAGTC 726 consensus_1997#1 ------------------------------------------------------------ consensus_1997#0 GCAAGTGATGNGGA 740 consensus_1997#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||