cluster # 1997

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Anopheles gambiae
cluster # 1997 cluster # 1997 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1997#0 length = 740 sequences # 1

consensus_1997#1 length = 620 sequences # 1

consensusID : consensus_1997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence

                              [GAGGNTGAACATGCTGTNTTTATTCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNGATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAACTCGTCAACTCTTTCTGCTACTTAACACCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCGTTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAGNCTATATNGGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTGGCCCAAGTATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTACATTCGCTCACTCTTGATTGGCCAACAGGAGCGAATAAAAGCATTCGCCACAAGGTATCTAGACACTCATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGTGGNGGGAACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGATGCACGGACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGCTATGNAAAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTTGGAGTCGCAAGTGATGNGGA]

[+] EMBL AL933200             [GAGGNTGAACATGCTGTNTTTATTCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNGATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAACTCGTCAACTCTTTCTGCTACTTAACACCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCGTTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAGNCTATATNGGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTGGCCCAAGTATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTACATTCGCTCACTCTTGATTGGCCAACAGGAGCGAATAAAAGCATTCGCCACAAGGTATCTAGACACTCATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGTGGNGGGAACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGATGCACGGACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGCTATGNAAAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTTGGAGTCGCAAGTGATGNGGA]




>consensus_1997#0
GAGGNTGAACATGCTGTNTTTATTCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNGA
TTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGG
AGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCG
AACTCGTCAACTCTTTCTGCTACTTAACACCCCTAGCTGGTTAGAGTTACGAAAAGCGAA
AACAATCGTTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAG
NCTATATNGGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTG
GCCCAAGTATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTAC
ATTCGCTCACTCTTGATTGGCCAACAGGAGCGAATAAAAGCATTCGCCACAAGGTATCTA
GACACTCATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGT
GGNGGGAACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGA
TGCACGGACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGC
TATGNAAAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTT
GGAGTCGCAAGTGATGNGGA

consensusID : consensus_1997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTACATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTGTTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAAGAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAATCGTCAACTCTTTCTGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCTTAATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTTGCTTAGCTTTGGCGCAACTTGGTTGCATTCCCTAGTAGTTCCCGATGCCAGTTTGTTTGTTTTATTTAGTTTTTTTTTTTGCAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTTAAATGTATACGCAATCCTTTGGACACCCGAACGCGTGGGCGG]

[-] EMBL BM585714             [TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTACATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTGTTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAAGAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTACGCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATTAAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAATCGTCAACTCTTTCTGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCTTAATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTTGCTTAGCTTTGGCGCAACTTGGTTGCATTCCCTAGTAGTTCCCGATGCCAGTTTGTTTGTTTTATTTAGTTTTTTTTTTTGCAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTTAAATGTATACGCAATCCTTTGGACACCCGAACGCGTGGGCGG]




>consensus_1997#1
TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTAC
ATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTG
TTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAA
GAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTAC
GCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATT
AAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAATCGTCAACTCTTTC
TGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCTT
AATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTTGCTTAGCTTTGGCGCAACTTG
GTTGCATTCCCTAGTAGTTCCCGATGCCAGTTTGTTTGTTTTATTTAGTTTTTTTTTTTG
CAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTTAAATGTATACGCAATCCTTTGG
ACACCCGAACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1997#0      ------------------------------------------------------------
consensus_1997#1      TGTTTGTATAAATTATCATGTAAAAGCGGGAAAATTTTGAGTTGATTTTAGCAATACTAC 60
                                                                                  

consensus_1997#0      ------------------------------------------------------------
consensus_1997#1      ATCTTTTTGAATCATTGGTGATTAGAGAAGAACGCCTAAAATATACATCTGTTGTCGTTG 120
                                                                                  

consensus_1997#0      --------------------------------GAGGNTGAACATGCTGTNTTTAT----- 23
consensus_1997#1      TTCAGTTGAAACGATTTGTAAACAAATTAATAAGAATTAGTCATCTCACGACGGCAGGAA 180
                                                           *   ***                

consensus_1997#0      ------TCCTNNTTGATTTGCTCAACAGTTCGATTTCTGTNG-ATTATTATTAACGTTAC 76
consensus_1997#1      GAGATATCGTAGTCGATTTGCTCAACAGTTCGGTTTCTGTTTTATTATTATTAACGTTAC 240
                            ** *  * ****************** *******   *****************

consensus_1997#0      GCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATT 136
consensus_1997#1      GCTACGCACTGTTATGTTTCATTACAAGGACGTGCAGCACACGGAGCTACCTTAAACATT 300
                      ************************************************************

consensus_1997#0      AAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAACTCGTCAACTCTTT 196
consensus_1997#1      AAAATATGCTTTTCGTTGCGCACACTCCTTCATCAAATCTTTCGAA-TCGTCAACTCTTT 359
                      ********************************************** *************

consensus_1997#0      CTGCTACTTAACAC--------CCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATCG 248
consensus_1997#1      CTGCTACTTAACTTTCTGCTTTCCCTAGCTGGTTAGAGTTACGAAAAGCGAAAACAATC- 418
                      ************          ************************************* 

consensus_1997#0      TTAATACGGCTGCATTTAAGTAAGGAACACGTACACATTATATGGCTATAAGNCTATATN 308
consensus_1997#1      TTAATACGGCTGCATTTAAGTAAGGAACACGTTCACATTTT----------GCTTAGCTT 468
                      ******************************** ****** *          *  **  * 

consensus_1997#0      GGGGCGGCAACTTGGGTTTGAATTTCCCCTTAGTAGCTTTACCCCCCAATTGGCCCAAGT 368
consensus_1997#1      TGGC--GCAACTTGG--TTGCATTCCC---TAGTAGTTCCCGATGCCAGTTTGTTTGT-- 519
                       **   *********  *** *** **   ****** *       *** ** *       

consensus_1997#0      ATTCACATACTCTCTCNNGTTCNCATATCAATATNNAAGTNTATATCAGTACATTCGCTC 428
consensus_1997#1      -TTTATTTAGTTTTTTTTTTTGCAATGTGATGCCAAAGAGCGATAAAATGAAGTTTTCTT 578
                       ** *  ** * * *    **   ** * *      *     ***  *  *  **  ** 

consensus_1997#0      ACTCTTGATTGGCCAACAG--GAGCGAATAAAAGCATTCGCCACAAGGTATCTAGACACT 486
consensus_1997#1      AAATGT-ATACGCAATCCTTTGGACACCCGAACGCGTGGGCGG----------------- 620
                      *    * **  ** * *    *  *     ** ** *  **                   

consensus_1997#0      CATCTAGAAAACGTTGANTTANTTAGCACGGTCGAACAGAGTCCCCGCTANTGTGGNGGG 546
consensus_1997#1      ------------------------------------------------------------
                                                                                  

consensus_1997#0      AACCGANCACCGNTGGCGCGTATAAAGACAAGGCCTCTGTAGGCNTNTGACCGATGCACG 606
consensus_1997#1      ------------------------------------------------------------
                                                                                  

consensus_1997#0      GACAGCCGTGCTCNATTAGTTCCAGTTAAGGGCCAAGTTTAGGCGAAAGGGCGCTATGNA 666
consensus_1997#1      ------------------------------------------------------------
                                                                                  

consensus_1997#0      AAGAGAAATGACNCCCGGNAGTGGCCGAACGTTTTAGCCCNGGGGAGCGCGGTTGGAGTC 726
consensus_1997#1      ------------------------------------------------------------
                                                                                  

consensus_1997#0      GCAAGTGATGNGGA 740
consensus_1997#1      --------------