cluster # 2008

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Anopheles gambiae
cluster # 2008 cluster # 2008 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2008#0 length = 655 sequences # 1

consensus_2008#1 length = 651 sequences # 1

consensusID : consensus_2008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGCCCACGCGTCCGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGCCACAGCCATAATGTGCACGAGTACAAATCGGAGGATGACAGCAGTTGGATGGAGAAGTCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCATGAAGTACAACAGCGGCGGCGGCGGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAATGGCGACAAGAGCAAGGGGCGCAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAGCTAACTGTCTGACGCCACGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCAATCTGCGGCAGCACATGCGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCCAGAAGCACTTCAACTCCGAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCAATCCTAACAGCTCTGGCGATGGTGAGCTGGTCGACACGAAACCTCCCGCGTCGCAACTGCAGCAGCAGCAGC]

[+] EMBL BM628442             [CCGCCCACGCGTCCGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGCCACAGCCATAATGTGCACGAGTACAAATCGGAGGATGACAGCAGTTGGATGGAGAAGTCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCATGAAGTACAACAGCGGCGGCGGCGGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAATGGCGACAAGAGCAAGGGGCGCAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAGCTAACTGTCTGACGCCACGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCAATCTGCGGCAGCACATGCGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCCAGAAGCACTTCAACTCCGAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCAATCCTAACAGCTCTGGCGATGGTGAGCTGGTCGACACGAAACCTCCCGCGTCGCAACTGCAGCAGCAGCAGC]




>consensus_2008#0
CCGCCCACGCGTCCGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAA
ACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGT
CAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACC
GGCCACAGCCATAATGTGCACGAGTACAAATCGGAGGATGACAGCAGTTGGATGGAGAAG
TCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCATGAAGTACAACAGCGGCGGCGGC
GGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAATGGCGACAAGAGCAAG
GGGCGCAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAGCTAACTGTCTGACGCCA
CGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCAATCTGCGGCAGCACATG
CGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCCAGAAGCACTTCAACTCC
GAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCAATCCTAACAGCTCTGGC
GATGGTGAGCTGGTCGACACGAAACCTCCCGCGTCGCAACTGCAGCAGCAGCAGC

consensusID : consensus_2008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCATGAACGACGTCAAGTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGGTGCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCCGTGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGCGCCGGGAGGAAAAGAACGAACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACATTGGGGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACGGCTCGATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATCGGACGTAGAACCGAAAGTGGAAATGGTCGAGTATCTGGACAGTGAGGCGGGCACGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGGCACAGCCATAATGTGCACGAGTACAA]

[+] EMBL BM602262             [CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCATGAACGACGTCAAGTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGGTGCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCCGTGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGCGCCGGGAGGAAAAGAACGAACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACATTGGGGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACGGCTCGATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATCGGACGTAGAACCGAAAGTGGAAATGGTCGAGTATCTGGACAGTGAGGCGGGCACGCACCAATCGCCAACGTACTGCAGCATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGGCACAGCCATAATGTGCACGAGTACAA]




>consensus_2008#1
CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCAT
GAACGACGTCAAGTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGGT
GCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCCG
TGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGCG
CCGGGAGGAAAAGAACGAACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACATTGG
GGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACGGCTC
GATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATCGGACGTAGAACCGAAAGT
GGAAATGGTCGAGTATCTGGACAGTGAGGCGGGCACGCACCAATCGCCAACGTACTGCAG
CATGGAACCGTACGCGGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCAAT
CAATAATGTCGCTGGTTTCAGTCAAACCGGCGCCGCGACCGTTTCCGGCGCAGCGGGACC
TAATCAACCCGGTGGCTCTACCGGGCACAGCCATAATGTGCACGAGTACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2008#0      CCGCCCACGCGTCCG-----CACCAATCGCCAACGTACTGCAGCAT--GGAACCGTACGC 53
consensus_2008#1      CCGCCCTTACTTTAAGGAGCTGCTAAAGAAAAATCCCTCCCCGCATCCGGTGTTTTTCAT 60
                      ******   * *          * **     **       * ****  **     * *  

consensus_2008#0      GGATAAAACCAATGCCCGCACTGCCATGGGCCATCTGGGGGCA-ATCAATAATGTCGCTG 112
consensus_2008#1      GAACGACGTCAA-GTACGATGTGCTGAAAGCCATCCTGCAGTACATGTACCTCGGCGAGG 119
                      * *  *   *** *  **   ***     ******  *  * * **  *    * **  *

consensus_2008#0      GTTTCAGT-CAAACCGGCGCCGCGACCGTTTC--CGGCGCAGCGGGACCTAATCAACCCG 169
consensus_2008#1      TGCACATCACGAACGAGAATCTGAAGGAATTCATCAAAACCGCCGAAGGGCTGCAAATCC 179
                          **   * ***  *   *   *    ***  *    * ** * *      ***  * 

consensus_2008#0      GTGGCTCTACCGGCCACAGCCATAATGTGC--ACGAGTACAAATCGG-AGGATG-ACAGC 225
consensus_2008#1      GTGGACTGAGCAAAGAAAACAATGGTGATCTGATTATCCCGACACACCAGGACGTACTGC 239
                      ****    * *    * * * **  **  *  *  *   * *  *   **** * ** **

consensus_2008#0      AGTTGGATGGAGAAGTCGCTCGACAACATTTCCGTCAACTCGGAGCAAAGCA-TGAAGTA 284
consensus_2008#1      GCCGGGAGGAAAAGAACG---AACAAATGCTGGACGAGTTCTGCCGGAAGCGGTCCGACA 296
                          *** * * *   **    ****    *     *  ** *    ****  *     *

consensus_2008#0      CAACAGCGGCGGCGGCGGTGGCGGTGGCAGTGGAGGCGGCAGCGGGAACGGCGGCGGCAA 344
consensus_2008#1      TTGGGGAGCTGCAGACATCGTCCGTGCTGAACATAAAGCGCGTCAAGACGGCCCCGGACG 356
                           * *  *  * *   * * ***           *   *     *****  ***   

consensus_2008#0      TGGCGACAAGAGCAAGGGGCG-CAGCAGTCGGAACAGCAACCGGTCCACGGACGACAAAG 403
consensus_2008#1      GCTCGATGACGGCCGGCGGCGGCGGCGGTCCGGATGGAAATGTATC---GGACG-TAGAA 412
                         ***  *  **  * **** * ** *** * *  * **    **   *****  * * 

consensus_2008#0      CTAACTGTCTGACGCCACGCTGCTGTCCGGTCTGTTCGCGGCTCTACTCAAACGTGTCCA 463
consensus_2008#1      CCGAAAGT--GGAAATGGTCGAGTATCTGGACAGTGAGGCGGGC-ACGCACCAATCGCCA 469
                      *  *  **  *        *   * ** ** * **  *  *  * ** **    *  ***

consensus_2008#0      ATCTGCGGCAGCACATGCGGCTGATACACAACCCGACGGCCGTCTGCTGCCCGATCTGCC 523
consensus_2008#1      ACGTACTGCAGC--ATGGAACCG-TACGCGGATAAAA------CCAATGCCCGCACTGCC 520
                      *  * * *****  ***   * * *** *      *       *   ******  *****

consensus_2008#0      AGAAGCACTTCAACTCCGAGCTCTACCTGAAGCGCCACTACTCGTCGATACACTCGATCA 583
consensus_2008#1      ATGGGC----CA--TCTGGGGGCAATCAATAATGTCGCTGGTTTCAGTCAAACCGG--CG 572
                      *   **    **  ** * *  * * *   *  * * **  *    *  * **  *  * 

consensus_2008#0      ATCCTAACAGCTCTGGCGATG-GTGAGCTGGTCGACACGAAACCTCCCGCGT-CGCAACT 641
consensus_2008#1      CCGCGACCGTTTCCGGCGCAGCGGGACCTAATCAACCCGGTGGCTCTACCGGGCACAGCC 632
                         * * *   ** ****  * * ** **  ** ** **    ***   **  * ** * 

consensus_2008#0      GCAGCA-GCAGCAGC---- 655
consensus_2008#1      ATAATGTGCACGAGTACAA 651
                        *    ***  **