cluster # 2014

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Anopheles gambiae
cluster # 2014 cluster # 2014 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2014#0 length = 966 sequences # 1

consensus_2014#1 length = 585 sequences # 1

consensusID : consensus_2014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 966
fasta sequence

                              [GCAAGAATCGGCCGAGGGTAGCTAAGCATCTCGAAATCTACGCCCACGCGCATGGAGCGCGAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAAGGTTAGCGTTCCGCGAAACGCTCATCGGACCGTGCGAGTTTTGACTATCTGCACAAGAAAGCCAGTCCGGGCGGGCAAGGGACAGTTATTGCGCGCCGTTTNCGGGGAAATTACTGGAAACCGCTGCCACCGGGAGCCAAAAAAACCAACGGAATTCGGAGGTTCCGGTTGGAACGAAAACGAATTGGGCAACCGAAAATTGTTCCCGGAAAACCAAGTTTCATTCCCCCGGGTTATTCGAAGAACAAGGGAATTNCCGGCCCAGGAATTTGGCCGGGAACAACACAGGGGGGTTCCTTCCCCTTAATTTCCGGGGGGCCCAACAAAAGGCCTTGGTTACCGGGCANTTTAACAGGTTTTCCCCCGGACCTTGCAAGGGAACCCGGGGTTGGCCCCCAACCNCAACAATTCGGTTAAGGAACCTTGCCGAAGGCCGGAAACCTTTGGCGGTTTTCAATTGGCCTTGGGACCGGGGCCCCCAAAGGAGGGCNGCCCAAGTTCGAAAGGAAGGTTGGTGGTTTCCGAAAAAACACGGGGTTAAGCCTGGCCCANGAGTAACGTTGGNAAACCCGAGTCNATGAATTAGGTTGGCACGGAGTGAACCGTGCCAACCNGGAAAGGAAGGTTCCCAAAGGTGGGCCAACNGGGTGGAATTTGGGGGGNCAACGGCATTTGAAAACCANAGCCGGGCCACCGGGNGGTTAATTCCAATTTTAACCGGGGGGTTACCCGGAGGACATGGGGGGGTTGGCCCGAAGAGGAGATTTTGCGGTTATAACCCGGTAGGTAACNNGCCAGGAAAGTGGTTTCCCACGGCGTTGTANACCGGACACCATTTGTTACCGGGGGTTTAACAGACACCCGTGGNGTT]

[+] EMBL BX468842             [GCAAGAATCGGCCGAGGGTAGCTAAGCATCTCGAAATCTACGCCCACGCGCATGGAGCGCGAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAAGGTTAGCGTTCCGCGAAACGCTCATCGGACCGTGCGAGTTTTGACTATCTGCACAAGAAAGCCAGTCCGGGCGGGCAAGGGACAGTTATTGCGCGCCGTTTNCGGGGAAATTACTGGAAACCGCTGCCACCGGGAGCCAAAAAAACCAACGGAATTCGGAGGTTCCGGTTGGAACGAAAACGAATTGGGCAACCGAAAATTGTTCCCGGAAAACCAAGTTTCATTCCCCCGGGTTATTCGAAGAACAAGGGAATTNCCGGCCCAGGAATTTGGCCGGGAACAACACAGGGGGGTTCCTTCCCCTTAATTTCCGGGGGGCCCAACAAAAGGCCTTGGTTACCGGGCANTTTAACAGGTTTTCCCCCGGACCTTGCAAGGGAACCCGGGGTTGGCCCCCAACCNCAACAATTCGGTTAAGGAACCTTGCCGAAGGCCGGAAACCTTTGGCGGTTTTCAATTGGCCTTGGGACCGGGGCCCCCAAAGGAGGGCNGCCCAAGTTCGAAAGGAAGGTTGGTGGTTTCCGAAAAAACACGGGGTTAAGCCTGGCCCANGAGTAACGTTGGNAAACCCGAGTCNATGAATTAGGTTGGCACGGAGTGAACCGTGCCAACCNGGAAAGGAAGGTTCCCAAAGGTGGGCCAACNGGGTGGAATTTGGGGGGNCAACGGCATTTGAAAACCANAGCCGGGCCACCGGGNGGTTAATTCCAATTTTAACCGGGGGGTTACCCGGAGGACATGGGGGGGTTGGCCCGAAGAGGAGATTTTGCGGTTATAACCCGGTAGGTAACNNGCCAGGAAAGTGGTTTCCCACGGCGTTGTANACCGGACACCATTTGTTACCGGGGGTTTAACAGACACCCGTGGNGTT]




>consensus_2014#0
GCAAGAATCGGCCGAGGGTAGCTAAGCATCTCGAAATCTACGCCCACGCGCATGGAGCGC
GAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAAGGTTAGCGTTCCGCGAAACGCTCAT
CGGACCGTGCGAGTTTTGACTATCTGCACAAGAAAGCCAGTCCGGGCGGGCAAGGGACAG
TTATTGCGCGCCGTTTNCGGGGAAATTACTGGAAACCGCTGCCACCGGGAGCCAAAAAAA
CCAACGGAATTCGGAGGTTCCGGTTGGAACGAAAACGAATTGGGCAACCGAAAATTGTTC
CCGGAAAACCAAGTTTCATTCCCCCGGGTTATTCGAAGAACAAGGGAATTNCCGGCCCAG
GAATTTGGCCGGGAACAACACAGGGGGGTTCCTTCCCCTTAATTTCCGGGGGGCCCAACA
AAAGGCCTTGGTTACCGGGCANTTTAACAGGTTTTCCCCCGGACCTTGCAAGGGAACCCG
GGGTTGGCCCCCAACCNCAACAATTCGGTTAAGGAACCTTGCCGAAGGCCGGAAACCTTT
GGCGGTTTTCAATTGGCCTTGGGACCGGGGCCCCCAAAGGAGGGCNGCCCAAGTTCGAAA
GGAAGGTTGGTGGTTTCCGAAAAAACACGGGGTTAAGCCTGGCCCANGAGTAACGTTGGN
AAACCCGAGTCNATGAATTAGGTTGGCACGGAGTGAACCGTGCCAACCNGGAAAGGAAGG
TTCCCAAAGGTGGGCCAACNGGGTGGAATTTGGGGGGNCAACGGCATTTGAAAACCANAG
CCGGGCCACCGGGNGGTTAATTCCAATTTTAACCGGGGGGTTACCCGGAGGACATGGGGG
GGTTGGCCCGAAGAGGAGATTTTGCGGTTATAACCCGGTAGGTAACNNGCCAGGAAAGTG
GTTTCCCACGGCGTTGTANACCGGACACCATTTGTTACCGGGGGTTTAACAGACACCCGT
GGNGTT

consensusID : consensus_2014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCGCCCACGCGTCCGGGGCGATACGTTCGTCACCAATCCAAAGCTGGAACTGTCGATGGAATCGATTTTCGTACCCGATCCGGTCGTTTCGATGGCAATCAAACCGACCAACTCGAAGGATCGTGACAACTTCGCCAAAGCGATCGCGCGCTTCACCAAGGAAGATCCAACGTTCCACTTCGAGTACGACGCGGACGTGAAGGAAACGCTCGTCTCGGGTATGGGTGAGCTGCATCTCGAAATCTACGCCCAGCGCATGGAGCGCGAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAAGGTAGCGTTCCGCGAAACGCTCATCGGACCGTGCGAGTTTGACTATCTGCACAAGAAGCAGTCTGGCGGGCAAGGACAGTATGCGCGCGTTTCGGGAATACTGGAACCGCTGCCCCCGCACCAAAACACCACGATCGAGTTCGTGGACGAAACGATGGGCACGAATGTGCCGAAACAGTTCATCCCCGGTATCGAGAAAGGATTCCGCCAGATGGCGGAAAAGGGTCTCCTATCGGGCCACAAGCTGTCCGGCATTAAGTTCCGCCTGCAGGACGGTGCCCACCA]

[+] EMBL BM651337             [CCGCCCACGCGTCCGGGGCGATACGTTCGTCACCAATCCAAAGCTGGAACTGTCGATGGAATCGATTTTCGTACCCGATCCGGTCGTTTCGATGGCAATCAAACCGACCAACTCGAAGGATCGTGACAACTTCGCCAAAGCGATCGCGCGCTTCACCAAGGAAGATCCAACGTTCCACTTCGAGTACGACGCGGACGTGAAGGAAACGCTCGTCTCGGGTATGGGTGAGCTGCATCTCGAAATCTACGCCCAGCGCATGGAGCGCGAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAAGGTAGCGTTCCGCGAAACGCTCATCGGACCGTGCGAGTTTGACTATCTGCACAAGAAGCAGTCTGGCGGGCAAGGACAGTATGCGCGCGTTTCGGGAATACTGGAACCGCTGCCCCCGCACCAAAACACCACGATCGAGTTCGTGGACGAAACGATGGGCACGAATGTGCCGAAACAGTTCATCCCCGGTATCGAGAAAGGATTCCGCCAGATGGCGGAAAAGGGTCTCCTATCGGGCCACAAGCTGTCCGGCATTAAGTTCCGCCTGCAGGACGGTGCCCACCA]




>consensus_2014#1
CCGCCCACGCGTCCGGGGCGATACGTTCGTCACCAATCCAAAGCTGGAACTGTCGATGGA
ATCGATTTTCGTACCCGATCCGGTCGTTTCGATGGCAATCAAACCGACCAACTCGAAGGA
TCGTGACAACTTCGCCAAAGCGATCGCGCGCTTCACCAAGGAAGATCCAACGTTCCACTT
CGAGTACGACGCGGACGTGAAGGAAACGCTCGTCTCGGGTATGGGTGAGCTGCATCTCGA
AATCTACGCCCAGCGCATGGAGCGCGAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAA
GGTAGCGTTCCGCGAAACGCTCATCGGACCGTGCGAGTTTGACTATCTGCACAAGAAGCA
GTCTGGCGGGCAAGGACAGTATGCGCGCGTTTCGGGAATACTGGAACCGCTGCCCCCGCA
CCAAAACACCACGATCGAGTTCGTGGACGAAACGATGGGCACGAATGTGCCGAAACAGTT
CATCCCCGGTATCGAGAAAGGATTCCGCCAGATGGCGGAAAAGGGTCTCCTATCGGGCCA
CAAGCTGTCCGGCATTAAGTTCCGCCTGCAGGACGGTGCCCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2014#0      GCAAGAATCGGCCGAGGGTAGCTAAGCATCTCGAAATCTACGCCCACGCGCATGGAGCGC 60
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      GAGTACAACTGTCCGGTAACGCTCGGCAAGCCCAAGGTTAGCGTTCCGCGAAACGCTCAT 120
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      CGGACCGTGCGAGTTTTGACTATCTGCACAAGAAAGCCAGTCCGGGCGGGCAAGGGACAG 180
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      TTATTGCGCGCCGTTTNCGGGGAAATTACTGGAAACCGCTGCCACCGGGAGCCAAAAAAA 240
consensus_2014#1      ---------------------------------------------------------CCG 3
                                                                                  

consensus_2014#0      CCAACGGAATTCGGAGGTTCCGGTTGGAACGAAAACGAATTGGGCAACCGAAAATTGTTC 300
consensus_2014#1      CCCACGCGTCCGGGGCGATACGTTCGTCACCAATCCAAAGCTGG--------AACTGTCG 55
                      ** ***      **  * * ** * *  ** **  * **   **        ** ***  

consensus_2014#0      CCGGAAAACCAAGTTTCATTCCC--CCGGGTTATTCGAAGAACAAGGGAATTN-CCGGCC 357
consensus_2014#1      ATGGAA--TCGATTTTCGTACCCGATCCGGTCGTTTCGATGGCAATCAAACCGACCAACT 113
                        ****   * * **** * ***   * ***  **   *   ***   **    **  * 

consensus_2014#0      CAGGAATTTGGCCGGGAACAACACAGGGGGGTTCCTTCCCCTTAATTTCCGGGGGGCCCA 417
consensus_2014#1      CGAAGGATCG--TGACAACTTCGCCAAAGCGATCGCGCGCTTCA--CCAAGGAAGATCCA 169
                      *      * *   *  ***  * *    * * **   * * * *      **  *  ***

consensus_2014#0      ACAAAAGGCCTTGGTTAC----CGGGCANTTTAACAGGTTTTCCCCCGGACCT---TGCA 470
consensus_2014#1      ACGTTCCACTTCGAGTACGACGCGGACGTGAAGGAAACGCTCGTCTCGGGTATGGGTGAG 229
                      **      * * *  ***    *** *        *    *   * ***   *   **  

consensus_2014#0      AGGGAACCCGGGGTTGGCCCCCAACCNCAACAATTCGGTTAAGGAACCTTGCCGAAGGCC 530
consensus_2014#1      CTGCATCTCGAAATCTACGCCCAGCGCATGGAGCGCGAGTACAACTGTCCGGTAACGCTC 289
                        * * * **   *   * **** *      *   **  **         *   * *  *

consensus_2014#0      GG-AAACCTTTGGCGGTTTTCAATTGGCCTTGGGACCGGGGCCCCCAAAGGAGGGCNGCC 589
consensus_2014#1      GGCAAGCCCAAGGTAGCGTTCCGCGAAACGCTCATC--GGACCGTGCGAGTTTGACTATC 347
                      ** ** **   **  *  ***       *      *  ** **     **   * *   *

consensus_2014#0      CAAGTTCGAAAGGAAGGTTGGTGGTTTCCGAAAAAACACGGG-GTTAAGCCTGGCCCANG 648
consensus_2014#1      T--GCACAAGAAGCAGTCTGGCGGGCAAGGACAGTATGCGCGCGTTTCGGGAATACTGGA 405
                         *  * * * * **  *** **     ** *  *  ** * ***  *      *    

consensus_2014#0      AGTAACGTTGGNAAACCCGAGT-CNATGAATTAGGTTG-GCACGGAGTGAACCGTGCCAA 706
consensus_2014#1      ACCGCTGCCCCCGCACCAAAACACCACGATCGAGTTCGTGGACGAAACGATGGGCACGAA 465
                      *     *       ***  *   * * **   ** * * * *** *  **   *  * **

consensus_2014#0      CCNGGAAAGGAAGGTTCCCAAAGGTGGGCCAACNGGGTGGAATTTGGGGGGNCAACGGCA 766
consensus_2014#1      TGTGCCGAAACAGTTCATCCCCGGTATCGAGAAAGGATTCCGCCAGATGGCGGAAAAGGG 525
                         *   *   ** *   *   ***      *  ** *       *  **   **  *  

consensus_2014#0      TTTGAAAACCANAGCCGGGCCACCGGGNGGTTAATTCCAATTTTAACCGGGGGGTTACCC 826
consensus_2014#1      TCTCCTATCGGGCCACAAGCTGTCCGGCATTAAGTTCCGCCTGCAGGACGGTGCCCACCA 585
                      * *   * *      *  **   * **   * * ****   *  *    ** *   *** 

consensus_2014#0      GGAGGACATGGGGGGGTTGGCCCGAAGAGGAGATTTTGCGGTTATAACCCGGTAGGTAAC 886
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      NNGCCAGGAAAGTGGTTTCCCACGGCGTTGTANACCGGACACCATTTGTTACCGGGGGTT 946
consensus_2014#1      ------------------------------------------------------------
                                                                                  

consensus_2014#0      TAACAGACACCCGTGGNGTT 966
consensus_2014#1      --------------------