These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 853 fasta sequence [AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAGTGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTTCTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACCGCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTATCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACAGCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGGTGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGCTNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGGGATATTGNTCGTA] [+] EMBL BX467752 [AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAGTGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTTCTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACCGCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTATCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACAGCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGGTGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGCTNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGGGATATTGNTCGTA] consensusID : consensus_2023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [AGATCCCAGGTTANGTCGAGCGGACGACACCTGCAGGGTCTTGCCCTAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGGCCAGCGGATGCCGTCGGGGGAAGTGCTAGCACCAGAGAGATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGGACTTTTTGGTCCACGGAAGCAGCCCAG] [+] EMBL AL695308 [AGATCCCAGGTTANGTCGAGCGGACGACACCTGCAGGGTCTTGCCCTAAGTACGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTTCCTGCGACGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCCGGAAGCAATCATACGTCCAAATGCGCTGACCAGGCCAGCGGATGCCGTCGGGGGAAGTGCTAGCACCAGAGAGATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAACGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAATCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGCGGAGGTGCAGCGAAACAGGACTTTTTGGTCCACGGAAGCAGCCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2023#0 AGATCGGCACGATGGCGACGTCGAGCGGACCGACACCCTGCAGGGTCTTGCCCTGAAGTA 60 consensus_2023#1 -----AGATCCCAGGTTANGTCGAGCGGAC-GACACC-TGCAGGGTCTTGCCCT-AAGTA 52 * * ** * *********** ****** **************** ***** consensus_2023#0 CGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTT 120 consensus_2023#1 CGGATGTAGTATGGAACAAATTAGGCGAGTAAATAGGTTACTGCCCACGGATACCATCTT 112 ************************************************************ consensus_2023#0 CCTGCGACCGTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCC 180 consensus_2023#1 CCTGCGAC-GTTCCTGATGGTACCGGTGGCGAAAGATTCACCCCACTATCCTAAGGACCC 171 ******** *************************************************** consensus_2023#0 GGAAGCAATCATACGTCCAAATGCGCTGACCAGCGCCAGCCGGATGCCGTCCGGGGGAAG 240 consensus_2023#1 GGAAGCAATCATACGTCCAAATGCGCTGACCAG-GCCAGC-GGATGCCGTC-GGGGGAAG 228 ********************************* ****** ********** ******** consensus_2023#0 TGCTAGCACCAGCAGCAGCATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAA 300 consensus_2023#1 TGCTAGCACCAGAGAG---ATCATTAGCAACAACAACAACAGTATCAGCTCGGACGGTAA 285 ************ ***************************************** consensus_2023#0 CGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAA 360 consensus_2023#1 CGGATACTCGATGGGCGACGAATCGCCGCTCGTCTCGCCCGAGGAGGAAAGTCGCAAGAA 345 ************************************************************ consensus_2023#0 TCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGC 420 consensus_2023#1 TCTGGAAGAGTTTCTCGGCAAAATCGACAGCTCGATCGCGTCCACCCGGAAGTGCATTGC 405 ************************************************************ consensus_2023#0 GGAGGTGCAGCGAAACAGCGACTTTGTCACGAGCAGCCAGAGCGACGACAATCTGTTCTT 480 consensus_2023#1 GGAGGTGCAGCGAAACAG-GACTTTTTGGTCCACGGAAGCAGCCCAG------------- 451 ****************** ****** * * * *** * consensus_2023#0 CTCGTCCTCGTCCGGCGGGGTGGGCAGTGGGAGCGGCAGCAGTGGGTACTACTCGAAACC 540 consensus_2023#1 ------------------------------------------------------------ consensus_2023#0 GCGTGCCTATTCGAACGCATCGTCCTCGTCGTCGATCTCGTCCTACCAGCAGTACCACTA 600 consensus_2023#1 ------------------------------------------------------------ consensus_2023#0 TCACGTACCCCGGGCAACAGCGCGCAGGCACGTCGGCGCGGGTGGGTAGCGGGGCGAACA 660 consensus_2023#1 ------------------------------------------------------------ consensus_2023#0 GCAGCACACACAAGCGCCAAGAGCTCCTCCGGGGAGTGCGGCGTCCGATACGAAACCAGG 720 consensus_2023#1 ------------------------------------------------------------ consensus_2023#0 TGATTCGGTGATTGAACGCCAAGGGCCAAGCGGGGTGCAAAAGTTCCCTTCCAGAAAAGC 780 consensus_2023#1 ------------------------------------------------------------ consensus_2023#0 TNNGAGCGGCCCAGCAGGAACAAGCTGTTCGAAGTTGTAGCATCAAACCGGCGGGCAAGG 840 consensus_2023#1 ------------------------------------------------------------ consensus_2023#0 GATATTGNTCGTA 853 consensus_2023#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||