cluster # 2025

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Anopheles gambiae
cluster # 2025 cluster # 2025 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2025#0 length = 694 sequences # 1

consensus_2025#1 length = 467 sequences # 1

consensusID : consensus_2025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCGGGGTAAGAGTATAACACCTCTACGAACGATAGATAGTCCATCGTACTAAACAAAACAAAAAACAAGAAAAACATTCATTCACGCTAAACTGTTCACTCTTGGCTGCCGTTCGTCATCTTTGCCGCAAGTGGCGGTGCGAGATGTTTGTTTTTATAGAGCTCCTTCGGCTCCCTAGTCTCGGTGTGTTTTGCCAGCAAAATATGTACGTTAGTGTGTCGATTTCGGTTAGTGTCGCGTATCACTTAGTATCACTGCGGCTGTGCGTCTTTCCGCTAGTGGTTTTTTTTTGCCCCATCATTTACTTGTTAAAAGCAATTGTTACGACTTGATGTATAATAAGGCTACACAGGGTGCTTTAGAAATCGGTTAACTCGGACTGTTTGTTGCGTGTGTATGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGCGTGTGTGCATTTAGTTTTTAGGAGTCACTTTCGGGAGCGGGAGTAGGACATGAGGAAATTGAATGGAAATCAGATCTCGTATCAATCGAAACCATTGCATAGATTCGCAACCAAAGTACAGAAACACACTCGCCTGCATGTACACAATAGAAGAACAAGAAGAAGAAGAAGTAGAAGAAATACACAAACAAATATGTCCTACAATTCCTGCTCTCTATTACGCTATCAGAATAGGTGTTTAGGAAGTCGGTGGACTGTGC]

[+] EMBL BM639353             [CCGGGGTAAGAGTATAACACCTCTACGAACGATAGATAGTCCATCGTACTAAACAAAACAAAAAACAAGAAAAACATTCATTCACGCTAAACTGTTCACTCTTGGCTGCCGTTCGTCATCTTTGCCGCAAGTGGCGGTGCGAGATGTTTGTTTTTATAGAGCTCCTTCGGCTCCCTAGTCTCGGTGTGTTTTGCCAGCAAAATATGTACGTTAGTGTGTCGATTTCGGTTAGTGTCGCGTATCACTTAGTATCACTGCGGCTGTGCGTCTTTCCGCTAGTGGTTTTTTTTTGCCCCATCATTTACTTGTTAAAAGCAATTGTTACGACTTGATGTATAATAAGGCTACACAGGGTGCTTTAGAAATCGGTTAACTCGGACTGTTTGTTGCGTGTGTATGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTGCGTGTGTGCATTTAGTTTTTAGGAGTCACTTTCGGGAGCGGGAGTAGGACATGAGGAAATTGAATGGAAATCAGATCTCGTATCAATCGAAACCATTGCATAGATTCGCAACCAAAGTACAGAAACACACTCGCCTGCATGTACACAATAGAAGAACAAGAAGAAGAAGAAGTAGAAGAAATACACAAACAAATATGTCCTACAATTCCTGCTCTCTATTACGCTATCAGAATAGGTGTTTAGGAAGTCGGTGGACTGTGC]




>consensus_2025#0
CCGGGGTAAGAGTATAACACCTCTACGAACGATAGATAGTCCATCGTACTAAACAAAACA
AAAAACAAGAAAAACATTCATTCACGCTAAACTGTTCACTCTTGGCTGCCGTTCGTCATC
TTTGCCGCAAGTGGCGGTGCGAGATGTTTGTTTTTATAGAGCTCCTTCGGCTCCCTAGTC
TCGGTGTGTTTTGCCAGCAAAATATGTACGTTAGTGTGTCGATTTCGGTTAGTGTCGCGT
ATCACTTAGTATCACTGCGGCTGTGCGTCTTTCCGCTAGTGGTTTTTTTTTGCCCCATCA
TTTACTTGTTAAAAGCAATTGTTACGACTTGATGTATAATAAGGCTACACAGGGTGCTTT
AGAAATCGGTTAACTCGGACTGTTTGTTGCGTGTGTATGTGTGTGTGTGTGTGTGTGCGT
GTGCGTGTGCGTGCGTGTGTGCATTTAGTTTTTAGGAGTCACTTTCGGGAGCGGGAGTAG
GACATGAGGAAATTGAATGGAAATCAGATCTCGTATCAATCGAAACCATTGCATAGATTC
GCAACCAAAGTACAGAAACACACTCGCCTGCATGTACACAATAGAAGAACAAGAAGAAGA
AGAAGTAGAAGAAATACACAAACAAATATGTCCTACAATTCCTGCTCTCTATTACGCTAT
CAGAATAGGTGTTTAGGAAGTCGGTGGACTGTGC

consensusID : consensus_2025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [AATTCCCCAGGTAAATCACAACAATATGTCTACAATTCTGCTCTCTATTACGCTATCAGAATAGGTGTTTAGGAAGCCGGTGGACAGTGCACAGACAAACGAACTCTCTCGGCCTGTGTCGGACGGTAGCATCACAGCATCGGTGCCAGGGGTAGTAAGCTTTGCGCATTCCGTCTCTGCCGCAAGGGCAGACGTTTGCGAAATCTGTCTGTGTGTAAATAGAACTGATAAGCGAGCTTTGTTTCGTTCTTATGAACCCACTAAACAGCTAATTCACGGTGAATATTAGTCAATCACTGTGCTCTACTGTTTANAACAAAATATTAAGGAAGCTTATCAATCACACTGTACACTGTGTACACTCTGATGANCTACGACAGTGNGACGATTTNCNCGCGNGCATCCTTCAGGCAACGATCCGGAGTGATGCTTCCAGTGAGTTCTCGTTGCCGGGATAGTGCCGGAAN]

[+] EMBL AL695311             [AATTCCCCAGGTAAATCACAACAATATGTCTACAATTCTGCTCTCTATTACGCTATCAGAATAGGTGTTTAGGAAGCCGGTGGACAGTGCACAGACAAACGAACTCTCTCGGCCTGTGTCGGACGGTAGCATCACAGCATCGGTGCCAGGGGTAGTAAGCTTTGCGCATTCCGTCTCTGCCGCAAGGGCAGACGTTTGCGAAATCTGTCTGTGTGTAAATAGAACTGATAAGCGAGCTTTGTTTCGTTCTTATGAACCCACTAAACAGCTAATTCACGGTGAATATTAGTCAATCACTGTGCTCTACTGTTTANAACAAAATATTAAGGAAGCTTATCAATCACACTGTACACTGTGTACACTCTGATGANCTACGACAGTGNGACGATTTNCNCGCGNGCATCCTTCAGGCAACGATCCGGAGTGATGCTTCCAGTGAGTTCTCGTTGCCGGGATAGTGCCGGAAN]




>consensus_2025#1
AATTCCCCAGGTAAATCACAACAATATGTCTACAATTCTGCTCTCTATTACGCTATCAGA
ATAGGTGTTTAGGAAGCCGGTGGACAGTGCACAGACAAACGAACTCTCTCGGCCTGTGTC
GGACGGTAGCATCACAGCATCGGTGCCAGGGGTAGTAAGCTTTGCGCATTCCGTCTCTGC
CGCAAGGGCAGACGTTTGCGAAATCTGTCTGTGTGTAAATAGAACTGATAAGCGAGCTTT
GTTTCGTTCTTATGAACCCACTAAACAGCTAATTCACGGTGAATATTAGTCAATCACTGT
GCTCTACTGTTTANAACAAAATATTAAGGAAGCTTATCAATCACACTGTACACTGTGTAC
ACTCTGATGANCTACGACAGTGNGACGATTTNCNCGCGNGCATCCTTCAGGCAACGATCC
GGAGTGATGCTTCCAGTGAGTTCTCGTTGCCGGGATAGTGCCGGAAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2025#0      -----CCGGGGTAAG--AGTATAACACCTCTACGAACGATAGATAGTCCATCGTACTAAA 53
consensus_2025#1      AATTCCCCAGGTAAATCACAACAATATGTCTACAAT---TCTGCTCTCTATTACGCTAT- 56
                           **  *****   *  * ** *  ***** *    *      ** **    ***  

consensus_2025#0      CAAAACAAAAAACAAGAAAAACATTCA----TTCACGCTAAACTGTTCACTCTTGGCTGC 109
consensus_2025#1      CAGAATAGGTGTTTAGGAAGCCGGTGGACAGTGCACAGACAAACGAACTCTCTCGGCCTG 116
                      ** ** *       ** **  *  *      * ***    **  *  * **** ***   

consensus_2025#0      CGTTCGTCATCTTTGCCGCAAGTGGCGGTGCGAGATGTT-TGTTTTTATAGAGCTCCTTC 168
consensus_2025#1      TGTCGGACGGTAGCATCACA-GCATCGGTGCCAGGGGTAGTAAGCTTTGCGCATTCCGTC 175
                       **  * *        * ** *   ****** **  **  *    **   *   *** **

consensus_2025#0      GGCTCCCTAGTCTCGGTGTGTTTTGCCAGCAAAATATGTACGTTAGTGTGTCGATTTCGG 228
consensus_2025#1      TCTGCCGCAAGGGCAG-ACGTTT-----GCGAAATCTGTCTGTGTGTAAATAGAACT-GA 228
                          **  *    * *   ****     ** **** ***  **  **   * **  * * 

consensus_2025#0      TTAGTGTCGCGTATCACTTAGTATCACTGCGGCTGTGCGTCTTTCCGCTAGTGGTTTTTT 288
consensus_2025#1      TAAGCGAGCTTTGTTTCGTTCTTATGAACCCACTAAACAGCTAATTCACGGTGAATATTA 288
                      * ** *     * *  * *  *       *  **   *  **        ***  * ** 

consensus_2025#0      TTTG--CCCCATCATTTACTTGTTAAAAGCAATTGTTACGACTTGATGTATAATAAGGCT 346
consensus_2025#1      GTCAATCACTGTGCTCTACTGTTTANAACAAAATATTAAGGAAGCTTAT-CAATCACACT 347
                       *    * *  *  * ****  *** **  ** * *** *      * *  *** *  **

consensus_2025#0      ACACAGGGTGCTTTAGAAATCGGTTAACTCGGACTGTTTGTTGCGTGTGTATGTGTGTGT 406
consensus_2025#1      GTACACTGTG---TACACTCTGATGANCTACGACAGTGNGACG-ATTTNCNCGCGNGCAT 403
                        ***  ***   ** *    * * * **  *** **  *  *  * *    * * *  *

consensus_2025#0      GTGTGTGTGTGCGTGTGCGTGTGCGTGCGTGTGTGCATTTAGTTTTTAGGAGTCACTTTC 466
consensus_2025#1      CCTTCAGGCAACGATCCGGAGTG-ATGCTTCCAGTGAGTTCTCGTTGCCGGGATAGTGCC 462
                         *  *    **     * ***  *** *      * **    **   * *  * *  *

consensus_2025#0      GGGAGCGGGAGTAGGACATGAGGAAATTGAATGGAAATCAGATCTCGTATCAATCGAAAC 526
consensus_2025#1      GGAAN------------------------------------------------------- 467
                      ** *                                                        

consensus_2025#0      CATTGCATAGATTCGCAACCAAAGTACAGAAACACACTCGCCTGCATGTACACAATAGAA 586
consensus_2025#1      ------------------------------------------------------------
                                                                                  

consensus_2025#0      GAACAAGAAGAAGAAGAAGTAGAAGAAATACACAAACAAATATGTCCTACAATTCCTGCT 646
consensus_2025#1      ------------------------------------------------------------
                                                                                  

consensus_2025#0      CTCTATTACGCTATCAGAATAGGTGTTTAGGAAGTCGGTGGACTGTGC 694
consensus_2025#1      ------------------------------------------------