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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence
[ATTCCCGAGGTATTGTGTGTGTGCATGTGTGTGTGTGTAGTAGTAGAAAGAGAGTGTGCTTTTTAATGTGTATTTGCTAGTGCGCGGGTTTGTGTCTGAAAAACATAGCTTGCCATGATGTCATATTGCGTTGAAAGTATTCTGATAATGTGTGTTATCATGTGAAACAGCGTGCGTTCACACTTGGAAAAAAGCTAAAGTTTGCATCGACAGCAGCGCTTGTTCCTCGGACGAGAACGCAGGTGTGCTGTTTCATGACTGTGAATGCGGACACCGGTGCGANAATGGAAACGCGCACAATAGCNATGAACTCGGCATTCCCTCACAGGTGTTATCGCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTAGTGTGCGCATGGGAAACTNTTGTGTGTGCATTGAGCAAGCGCGCAGAGTGTTCTNTTTCAATGGGTAGTAACAGTATACATGAGCGCGGCAGATAACCTGTAACTAGGTATNATGAATGGGTAGATGCCTCGCTCACTTACTCATNTGATAGTCAACATATCCATACGCTATAANATAGCTAGCTCGACCAACGATAGTGATTCATCGCGTATAAACAGCAGAATGCCAGGCAGAGCACGGNCATCAGTCGTGTCCCAGTTTNAACCAGTGTGTTCTCTGACGGTCTTANCCAAGCCATTTNATTACANATAGGGTCAGACGGTANACATTGTACCGACTTTAATCAGCGCC]
[+] EMBL AL695315 [ATTCCCGAGGTATTGTGTGTGTGCATGTGTGTGTGTGTAGTAGTAGAAAGAGAGTGTGCTTTTTAATGTGTATTTGCTAGTGCGCGGGTTTGTGTCTGAAAAACATAGCTTGCCATGATGTCATATTGCGTTGAAAGTATTCTGATAATGTGTGTTATCATGTGAAACAGCGTGCGTTCACACTTGGAAAAAAGCTAAAGTTTGCATCGACAGCAGCGCTTGTTCCTCGGACGAGAACGCAGGTGTGCTGTTTCATGACTGTGAATGCGGACACCGGTGCGANAATGGAAACGCGCACAATAGCNATGAACTCGGCATTCCCTCACAGGTGTTATCGCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTAGTGTGCGCATGGGAAACTNTTGTGTGTGCATTGAGCAAGCGCGCAGAGTGTTCTNTTTCAATGGGTAGTAACAGTATACATGAGCGCGGCAGATAACCTGTAACTAGGTATNATGAATGGGTAGATGCCTCGCTCACTTACTCATNTGATAGTCAACATATCCATACGCTATAANATAGCTAGCTCGACCAACGATAGTGATTCATCGCGTATAAACAGCAGAATGCCAGGCAGAGCACGGNCATCAGTCGTGTCCCAGTTTNAACCAGTGTGTTCTCTGACGGTCTTANCCAAGCCATTTNATTACANATAGGGTCAGACGGTANACATTGTACCGACTTTAATCAGCGCC]
consensusID : consensus_2027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[ATGTGTGTTATCATGTGAAACATTGTGCGTTTACACTTGGATAAAAACTAAAGTTTGCATCGACAGCAGCCCTTGTTCCTCGGACGAAAACGCAGGTGTGCTGTTTCATGAATGTGAATGCGACACCGGTGCGAAATGGACACACGCACAATATCAATGAACTCGGCATTCTCTCACAGGTGTTTCTCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTGTGTGCGAATGGTAAACTTTGTGCGTGCATTGAGCTGGCGCGCAGTTGTTCTTTTCAATGGGCGTTTTGTTTCATGAGCGCGGCAGTATTCTGTTCTCGATTTTGAAGGGAAGACGCTTACTCGCGTACTCGTTGATAGTTTTTATCCATGCGATGTTTTCGCTGCTCGACAACGATGTAATTCATCGCGTATAGAAGTAGAA]
[+] EMBL BX627260 [ATGTGTGTTATCATGTGAAACATTGTGCGTTTACACTTGGATAAAAACTAAAGTTTGCATCGACAGCAGCCCTTGTTCCTCGGACGAAAACGCAGGTGTGCTGTTTCATGAATGTGAATGCGACACCGGTGCGAAATGGACACACGCACAATATCAATGAACTCGGCATTCTCTCACAGGTGTTTCTCCAGTGCACGCCATTGAAAGGCCTTCGTGCATCTCTGCGTTGCACGTTGTGTGCGAATGGTAAACTTTGTGCGTGCATTGAGCTGGCGCGCAGTTGTTCTTTTCAATGGGCGTTTTGTTTCATGAGCGCGGCAGTATTCTGTTCTCGATTTTGAAGGGAAGACGCTTACTCGCGTACTCGTTGATAGTTTTTATCCATGCGATGTTTTCGCTGCTCGACAACGATGTAATTCATCGCGTATAGAAGTAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2027#0 ATTCCCGAGGTATTGTGTGTGTGCATGTGTGTGTGTGTAGTAGTAGAAAGAGAGTGTGCT 60
consensus_2027#1 ------------------------------------------------------------
consensus_2027#0 TTTTAATGTGTATTTGCTAGTGCGCGGGTTTGTGTCTGAAAAACATAGCTTGCCATGATG 120
consensus_2027#1 ------------------------------------------------------------
consensus_2027#0 TCATATTGCGTTGAAAGTATTCTGATAATGTGTGTTATCATGTGAAACAGCGTGCGTTCA 180
consensus_2027#1 ---------------------------ATGTGTGTTATCATGTGAAACATTGTGCGTTTA 33
********************** ******* *
consensus_2027#0 CACTTGGAAAAAAGCTAAAGTTTGCATCGACAGCAGCGCTTGTTCCTCGGACGAGAACGC 240
consensus_2027#1 CACTTGGATAAAAACTAAAGTTTGCATCGACAGCAGCCCTTGTTCCTCGGACGAAAACGC 93
******** **** *********************** **************** *****
consensus_2027#0 AGGTGTGCTGTTTCATGACTGTGAATGCGGACACCGGTGCGANAATGGAAACGCGCACAA 300
consensus_2027#1 AGGTGTGCTGTTTCATGAATGTGAATGCG-ACACCGGTGCGAAA-TGGACACACGCACAA 151
****************** ********** ************ * **** ** *******
consensus_2027#0 TAGCNATGAACTCGGCATTCCCTCACAGGTGTTATCGCCAGTGCACGCCATTGAAAGGCC 360
consensus_2027#1 TATCAATGAACTCGGCATTCTCTCACAGGTGTT-TCTCCAGTGCACGCCATTGAAAGGCC 210
** * *************** ************ ** ***********************
consensus_2027#0 TTCGTGCATCTCTGCGTTGCACGTTAGTGTGCGCATGGGAAACTNTTGTGTGTGCATTGA 420
consensus_2027#1 TTCGTGCATCTCTGCGTTGCACGTT-GTGTGCGAATGGTAAACTTT-GTGCGTGCATTGA 268
************************* ******* **** ***** * *** *********
consensus_2027#0 GCAAGCGCGCAGAGTGTTCTNTTTCAATGGGTAGTAACAGTATACATGAGCGCGGCAGAT 480
consensus_2027#1 GCTGGCGCGCAGT-TGTTCTTTT-CAATGGGCGTT--TTGTTT-CATGAGCGCGGCAG-T 322
** ******** ****** ** ******* * ** * ************** *
consensus_2027#0 AACCTGTAACTAGGTATNATGAATGGGTAGATGCCTCGCTCACTTACTCATNTGATAGTC 540
consensus_2027#1 ATTCTGTTCTCG---ATTTTGAA-GGGAAGACGC-TTACTCGCGTACTCGTT-GATAGTT 376
* **** ** **** *** *** ** * *** * ***** * ******
consensus_2027#0 AACATATCCATACGCTATAANATAGCTAGCTCGACCAACGATAGTGATTCATCGCGTATA 600
consensus_2027#1 --TTTATCCATGCGATGT--TTTCGCT-GCTCGAC-AACGAT-GTAATTCATCGCGTATA 429
******* ** * * * *** ******* ****** ** **************
consensus_2027#0 AACAGCAGAATGCCAGGCAGAGCACGGNCATCAGTCGTGTCCCAGTTTNAACCAGTGTGT 660
consensus_2027#1 GA-AGTAGAA-------------------------------------------------- 438
* ** ****
consensus_2027#0 TCTCTGACGGTCTTANCCAAGCCATTTNATTACANATAGGGTCAGACGGTANACATTGTA 720
consensus_2027#1 ------------------------------------------------------------
consensus_2027#0 CCGACTTTAATCAGCGCC 738
consensus_2027#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||