cluster # 2030

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Anopheles gambiae
cluster # 2030 cluster # 2030 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2030#0 length = 641 sequences # 1

consensus_2030#1 length = 465 sequences # 1

consensusID : consensus_2030#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGCGCAGCCCCCACAGAACGCCTCGATGCGAGTACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGCGGATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGATGGATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGTGGCGGCGGCGGCGGCGGTGGCGGTGGTCGCGACAAACCCGACAAACAGCGGCAACAGCAGCAGCAGCAGCAGCAATCCCGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCGGCTCGAAGCGCAACAAAAAGAACAAGAAGGATGCGCCGGCGCCCATGGACCCGGGTGGTGATACGCCGCCTACCGCCCACCATGACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGAAGCTGCCGGCGAACGATGAGTTTTACTTCGTCGGGCCGGACTGGACGCTCGGACAAAATGCGTCGTGCCGGGCGTACATCAACTTCACCAACCCGGCGGAACATCTTCCGGTTCACGGACAGCTACGACGGGTACACGTTCGTGGACAGCAAGGGCATGAAGTACCAGGCGGTGGTGGAG]

[+] EMBL BM601779             [CCGCCCACGCGTCCGCCCACGCGTCCGCGCGCAGCCCCCACAGAACGCCTCGATGCGAGTACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGCGGATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGATGGATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGTGGCGGCGGCGGCGGCGGTGGCGGTGGTCGCGACAAACCCGACAAACAGCGGCAACAGCAGCAGCAGCAGCAGCAATCCCGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCGGCTCGAAGCGCAACAAAAAGAACAAGAAGGATGCGCCGGCGCCCATGGACCCGGGTGGTGATACGCCGCCTACCGCCCACCATGACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGAAGCTGCCGGCGAACGATGAGTTTTACTTCGTCGGGCCGGACTGGACGCTCGGACAAAATGCGTCGTGCCGGGCGTACATCAACTTCACCAACCCGGCGGAACATCTTCCGGTTCACGGACAGCTACGACGGGTACACGTTCGTGGACAGCAAGGGCATGAAGTACCAGGCGGTGGTGGAG]




>consensus_2030#0
CCGCCCACGCGTCCGCCCACGCGTCCGCGCGCAGCCCCCACAGAACGCCTCGATGCGAGT
ACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGCG
GATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGATG
GATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGTGGCGGCGGCGGCGGCGGT
GGCGGTGGTCGCGACAAACCCGACAAACAGCGGCAACAGCAGCAGCAGCAGCAGCAATCC
CGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCGGCTCGAAGCGCAACAAAAAGAAC
AAGAAGGATGCGCCGGCGCCCATGGACCCGGGTGGTGATACGCCGCCTACCGCCCACCAT
GACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGAAGCTGCCGGCGAACGATGA
GTTTTACTTCGTCGGGCCGGACTGGACGCTCGGACAAAATGCGTCGTGCCGGGCGTACAT
CAACTTCACCAACCCGGCGGAACATCTTCCGGTTCACGGACAGCTACGACGGGTACACGT
TCGTGGACAGCAAGGGCATGAAGTACCAGGCGGTGGTGGAG

consensusID : consensus_2030#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GCCCGTACTGATCGTCACCATTTTCACGCGCAGCCCCCACAGAACGCCTCGATGCGAGTACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGCGGATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGATGGATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGCGGCGGCGGCGGTGGCGGTGGTCGCGACAAACCCGATAAACAGCGGCAACAACAGCAGCAGCAGCAGCAGCAATCCCGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCAGCTCGAAGCGCAACAAGCAAGAACAAGAAGGATGCGCCGGCGCCCATGACGCGGGTGGGTGATACGCCGCCTACCGCCCCACCATGACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGGNAAGCT]

[+] EMBL BX619433             [GCCCGTACTGATCGTCACCATTTTCACGCGCAGCCCCCACAGAACGCCTCGATGCGAGTACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGCGGATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGATGGATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGCGGCGGCGGCGGTGGCGGTGGTCGCGACAAACCCGATAAACAGCGGCAACAACAGCAGCAGCAGCAGCAGCAATCCCGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCAGCTCGAAGCGCAACAAGCAAGAACAAGAAGGATGCGCCGGCGCCCATGACGCGGGTGGGTGATACGCCGCCTACCGCCCCACCATGACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGGNAAGCT]




>consensus_2030#1
GCCCGTACTGATCGTCACCATTTTCACGCGCAGCCCCCACAGAACGCCTCGATGCGAGTA
CGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGCGG
ATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGATGG
ATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGCGGCGGCGGCGGTGGCGGTG
GTCGCGACAAACCCGATAAACAGCGGCAACAACAGCAGCAGCAGCAGCAGCAATCCCGCA
AGGACAAGAAGGATAAGGGCGGCAAATCGGGCAGCTCGAAGCGCAACAAGCAAGAACAAG
AAGGATGCGCCGGCGCCCATGACGCGGGTGGGTGATACGCCGCCTACCGCCCCACCATGA
CGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGGNAAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2030#0      CCGCCCACGC-GTCCGCCCACGCGTCCGCGCGCAGCCCCCACAGAACGCCTCGATGCGAG 59
consensus_2030#1      --GCCCGTACTGATCGTCACCATTTTCACGCGCAGCCCCCACAGAACGCCTCGATGCGAG 58
                        ****   * *  ** *  *   * * ********************************

consensus_2030#0      TACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGC 119
consensus_2030#1      TACGTCGTGTGCGGGCAAACCGGAAAGCAACAAACCGATTTCTCGGCTGGTACGGCTCGC 118
                      ************************************************************

consensus_2030#0      GGATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGAT 179
consensus_2030#1      GGATATCGTAACAGCCCTGGCGGTCATCGACCGTGAGTGTACTGGTGCGGCCGGACCGAT 178
                      ************************************************************

consensus_2030#0      GGATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGGTGGCGGCGGCGGCGGCGG 239
consensus_2030#1      GGATCAACCCAAGTCCACCGGAACACGCGCCACCGGTGGCGG------CGGCGGCGGCGG 232
                      ******************************************      ************

consensus_2030#0      TGGCGGTGGTCGCGACAAACCCGACAAACAGCGGCAACA---GCAGCAGCAGCAGCAGCA 296
consensus_2030#1      TGGCGGTGGTCGCGACAAACCCGATAAACAGCGGCAACAACAGCAGCAGCAGCAGCAGCA 292
                      ************************ **************   ******************

consensus_2030#0      ATCCCGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCGGCTCGAAGCGCAACAAA-A 355
consensus_2030#1      ATCCCGCAAGGACAAGAAGGATAAGGGCGGCAAATCGGGCAGCTCGAAGCGCAACAAGCA 352
                      **************************************** ****************  *

consensus_2030#0      AGAACAAGAAGGATGCGCCGGCGCCCATGGACCCGGGTGGTGATACGCCGCCTACCGCCC 415
consensus_2030#1      AGAACAAGAAGGATGCGCCGGCGCCCATGACGCGGGTGGGTGATACGCCGCCTACCGCCC 412
                      *****************************   * **  **********************

consensus_2030#0      -ACCATGACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGG--AAGCTGCCGGCG 472
consensus_2030#1      CACCATGACGGAGGCACTGTTCTGCGAGCAGATCGCGGTCGATGGGGNAAGCT------- 465
                       *********************************************  *****       

consensus_2030#0      AACGATGAGTTTTACTTCGTCGGGCCGGACTGGACGCTCGGACAAAATGCGTCGTGCCGG 532
consensus_2030#1      ------------------------------------------------------------
                                                                                  

consensus_2030#0      GCGTACATCAACTTCACCAACCCGGCGGAACATCTTCCGGTTCACGGACAGCTACGACGG 592
consensus_2030#1      ------------------------------------------------------------
                                                                                  

consensus_2030#0      GTACACGTTCGTGGACAGCAAGGGCATGAAGTACCAGGCGGTGGTGGAG 641
consensus_2030#1      -------------------------------------------------